Variant report

Variant	rs1724586
Chromosome Location	chr15:52744176-52744177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52742248..52744270-chr15:52748273..52751155,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11633035	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs11638118	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11638675	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs12593858	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1615028	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1626180	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs1632403	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1669859	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1669868	0.98[ASN][1000 genomes]
rs1669871	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1669876	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1693500	1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs1693511	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1693513	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1693520	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1693521	1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs1724584	1.00[ASN][1000 genomes]
rs1724613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1724614	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1724615	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1724617	1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs1917972	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs2246133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2444014	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2444018	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2453983	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2453984	1.00[ASW][hapmap];0.89[CEU][hapmap];0.96[GIH][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2600901	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2693463	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2693467	1.00[CHB][hapmap]
rs4238392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7178682	0.95[ASN][1000 genomes]
rs8035295	1.00[CHB][hapmap];0.94[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1054899	chr15:52662365-52803756	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1832020	chr15:52702400-52901914	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52730400-52744600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr15:52732600-52750600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:52734600-52753200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:52734800-52747400	Weak transcription	HSMM	muscle
5	chr15:52738800-52744600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:52739000-52751800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:52739000-52753600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:52740400-52756200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr15:52740600-52744200	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:52740600-52753200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr15:52742000-52755800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr15:52742200-52751600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:52742200-52753000	Weak transcription	NHEK	skin
14	chr15:52742400-52744400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:52742400-52744600	Weak transcription	Left Ventricle	heart
16	chr15:52743200-52744200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:52743400-52744800	Enhancers	Right Atrium	heart
18	chr15:52743600-52744800	Enhancers	Brain Cingulate Gyrus	brain
19	chr15:52743600-52744800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr15:52743800-52758200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:52744000-52744200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links