Variant report

Variant	rs11633035
Chromosome Location	chr15:52602693-52602694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52602148..52604034-chr15:52608756..52610606,2	MCF-7	breast:
2	chr15:52532801..52535731-chr15:52601515..52603297,2	MCF-7	breast:
3	chr15:52597059..52600522-chr15:52602504..52605228,3	MCF-7	breast:
4	chr15:52590879..52593445-chr15:52599970..52603838,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10444827	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10851513	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11637651	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11638118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11638675	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12593858	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1626180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[MKK][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1632403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.92[ASN][1000 genomes]
rs1669859	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1669871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1669875	0.89[ASN][1000 genomes]
rs1669876	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1693500	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs1724583	1.00[MEX][hapmap]
rs1724586	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs1724613	1.00[CHB][hapmap]
rs1917972	1.00[CHB][hapmap]
rs1967624	0.81[ASN][1000 genomes]
rs2444012	0.81[ASN][1000 genomes]
rs2444014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs2693459	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2693467	1.00[CHB][hapmap]
rs62015995	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62015997	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62016004	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62016006	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8031817	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8035295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52588400-52602800	Weak transcription	Aorta	Aorta
2	chr15:52593600-52608600	Weak transcription	Fetal Brain Male	brain
3	chr15:52595200-52605600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr15:52595400-52605600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:52595400-52610800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:52595400-52614200	Weak transcription	Fetal Lung	lung
7	chr15:52595600-52603400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:52595600-52609800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:52595800-52628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr15:52596000-52603000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:52596000-52604800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:52596000-52605000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:52596000-52605000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:52596000-52608400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:52596000-52608800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:52596000-52611000	Weak transcription	Fetal Stomach	stomach
17	chr15:52596200-52602800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:52596200-52623600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr15:52596400-52605000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:52596400-52608600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:52597600-52608600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr15:52597800-52629600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:52597800-52643400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr15:52598200-52602800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:52598400-52608400	Weak transcription	Brain Hippocampus Middle	brain
26	chr15:52598800-52602800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:52598800-52604400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr15:52599000-52605200	Weak transcription	HMEC	breast
29	chr15:52599000-52605200	Weak transcription	NHEK	skin
30	chr15:52599200-52602800	Weak transcription	Brain Substantia Nigra	brain
31	chr15:52599200-52605000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr15:52599200-52611000	Weak transcription	NHLF	lung
33	chr15:52599400-52611000	Weak transcription	Fetal Thymus	thymus
34	chr15:52599400-52611000	Weak transcription	Thymus	Thymus
35	chr15:52599600-52605400	Weak transcription	Brain Germinal Matrix	brain
36	chr15:52599800-52611000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:52599800-52611000	Weak transcription	A549	lung
38	chr15:52600400-52607400	Weak transcription	Colon Smooth Muscle	Colon
39	chr15:52600400-52611200	Weak transcription	Colonic Mucosa	Colon
40	chr15:52600600-52603200	Weak transcription	Brain Angular Gyrus	brain
41	chr15:52600600-52611000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr15:52600600-52624200	Weak transcription	Liver	Liver
43	chr15:52600800-52603000	Enhancers	NHDF-Ad	bronchial
44	chr15:52600800-52603800	Strong transcription	Primary T cells from cord blood	blood
45	chr15:52600800-52622800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr15:52600800-52646600	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr15:52601000-52603600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:52601000-52603600	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr15:52601000-52603600	Strong transcription	Ovary	ovary
50	chr15:52601000-52603600	Strong transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links