Variant report

Variant	rs11637651
Chromosome Location	chr15:52664408-52664409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52659363..52660906-chr15:52661946..52664641,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10444827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10851513	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11633035	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11638118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638675	1.00[ASN][1000 genomes]
rs12593858	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1534201	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1626180	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1632403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1669859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1669865	1.00[AFR][1000 genomes]
rs1669868	0.84[EUR][1000 genomes]
rs1669871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1669875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1669876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1693521	1.00[AFR][1000 genomes]
rs1724584	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1724617	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1724640	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1917972	0.81[ASN][1000 genomes]
rs1967624	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2444012	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2444014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2444017	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2462855	1.00[AFR][1000 genomes]
rs2600901	0.81[ASN][1000 genomes]
rs2693459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59277991	1.00[AFR][1000 genomes]
rs62015995	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62015997	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62016004	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62016006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7178682	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs8031817	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8035295	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1054899	chr15:52662365-52803756	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52609800-52677600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:52611800-52675800	Weak transcription	Gastric	stomach
3	chr15:52613600-52666600	Weak transcription	Right Ventricle	heart
4	chr15:52621200-52666600	Weak transcription	Fetal Brain Male	brain
5	chr15:52630600-52684800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:52631600-52679200	Weak transcription	Fetal Intestine Small	intestine
7	chr15:52632600-52670400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:52638000-52671600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:52640600-52666600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:52641800-52666800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:52644000-52666600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:52644200-52680800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:52644600-52665400	Weak transcription	A549	lung
14	chr15:52644600-52730200	Weak transcription	Esophagus	oesophagus
15	chr15:52647400-52690600	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:52649000-52687200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:52649600-52670600	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:52649600-52677600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr15:52649800-52676400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:52650000-52670200	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr15:52650000-52670400	Strong transcription	HUVEC	blood vessel
22	chr15:52650200-52669200	Strong transcription	Primary B cells from cord blood	blood
23	chr15:52650400-52666800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:52651000-52666600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:52652200-52670400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr15:52653400-52666600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr15:52653400-52666800	Weak transcription	Aorta	Aorta
28	chr15:52653600-52677400	Weak transcription	Colonic Mucosa	Colon
29	chr15:52654400-52666400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:52654400-52666400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr15:52655000-52666600	Weak transcription	Osteobl	bone
32	chr15:52655800-52665800	Weak transcription	Fetal Thymus	thymus
33	chr15:52655800-52666400	Weak transcription	Liver	Liver
34	chr15:52655800-52675200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:52656200-52666600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:52656800-52674000	Strong transcription	Primary T cells from cord blood	blood
37	chr15:52657400-52670000	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr15:52657800-52666600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr15:52658400-52687200	Weak transcription	Small Intestine	intestine
40	chr15:52658800-52664800	Strong transcription	NHDF-Ad	bronchial
41	chr15:52658800-52666600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:52659000-52676600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:52659000-52676600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:52659200-52669000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:52659200-52669200	Strong transcription	Adipose Nuclei	Adipose
46	chr15:52659200-52671800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr15:52659200-52676400	Strong transcription	Stomach Smooth Muscle	stomach
48	chr15:52659200-52676600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr15:52659200-52676800	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr15:52659200-52677000	Strong transcription	Duodenum Smooth Muscle	Duodenum

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