Variant report

Variant	rs59277991
Chromosome Location	chr15:52676932-52676933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10444827	1.00[AFR][1000 genomes]
rs11637651	1.00[AFR][1000 genomes]
rs11638118	1.00[AFR][1000 genomes]
rs12593858	0.86[AFR][1000 genomes]
rs1632403	1.00[AFR][1000 genomes]
rs1669859	1.00[AFR][1000 genomes]
rs1669865	1.00[AFR][1000 genomes]
rs1669871	1.00[AFR][1000 genomes]
rs1669875	1.00[AFR][1000 genomes]
rs1669876	1.00[AFR][1000 genomes]
rs1693521	1.00[AFR][1000 genomes]
rs1724584	1.00[AFR][1000 genomes]
rs1724617	1.00[AFR][1000 genomes]
rs1724640	1.00[AFR][1000 genomes]
rs2444014	1.00[AFR][1000 genomes]
rs2444017	1.00[AFR][1000 genomes]
rs2462855	1.00[AFR][1000 genomes]
rs2693459	1.00[AFR][1000 genomes]
rs62015997	0.86[AFR][1000 genomes]
rs62016004	1.00[AFR][1000 genomes]
rs7178682	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1054899	chr15:52662365-52803756	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52609800-52677600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:52630600-52684800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:52631600-52679200	Weak transcription	Fetal Intestine Small	intestine
4	chr15:52644200-52680800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:52644600-52730200	Weak transcription	Esophagus	oesophagus
6	chr15:52647400-52690600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr15:52649000-52687200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:52649600-52677600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr15:52653600-52677400	Weak transcription	Colonic Mucosa	Colon
10	chr15:52658400-52687200	Weak transcription	Small Intestine	intestine
11	chr15:52659200-52677000	Strong transcription	Duodenum Smooth Muscle	Duodenum
12	chr15:52662600-52683600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:52662600-52685000	Weak transcription	Psoas Muscle	Psoas
14	chr15:52663200-52711400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr15:52663400-52708600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr15:52665200-52720600	Weak transcription	Pancreas	Pancrea
17	chr15:52665600-52677200	Weak transcription	Fetal Intestine Large	intestine
18	chr15:52667000-52679600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:52667000-52682000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:52667000-52684800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:52667000-52686000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr15:52667000-52686600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:52667600-52677000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:52667600-52684400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:52668000-52683400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr15:52668800-52679400	Weak transcription	NH-A	brain
27	chr15:52668800-52683800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr15:52668800-52730400	Weak transcription	Aorta	Aorta
29	chr15:52669200-52683400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:52669400-52693400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr15:52671000-52677200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:52671200-52682000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:52671400-52681400	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr15:52671600-52677000	Strong transcription	Primary B cells from cord blood	blood
35	chr15:52672000-52679600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr15:52672400-52684000	Weak transcription	Fetal Heart	heart
37	chr15:52673000-52677000	Strong transcription	HSMM	muscle
38	chr15:52673800-52683800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:52673800-52684800	Weak transcription	Hela-S3	cervix
40	chr15:52673800-52730200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr15:52674000-52677600	Weak transcription	Placenta	Placenta
42	chr15:52674000-52678000	Weak transcription	HSMMtube	muscle
43	chr15:52674000-52703800	Weak transcription	Fetal Brain Male	brain
44	chr15:52674800-52677000	Strong transcription	Primary T cells from cord blood	blood
45	chr15:52674800-52681400	Strong transcription	Primary B cells from peripheral blood	blood
46	chr15:52675000-52686200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr15:52675000-52697400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr15:52675200-52677600	Genic enhancers	HUVEC	blood vessel
49	chr15:52675600-52677000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr15:52675800-52677000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links