Variant report

Variant	rs8035295
Chromosome Location	chr15:52628489-52628490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52622486..52625746-chr15:52626312..52630161,4	MCF-7	breast:
2	chr15:52627079..52628718-chr15:52639063..52641571,2	K562	blood:
3	chr15:52548190..52549234-chr15:52628404..52629343,11	MCF-7	breast:
4	chr15:52626828..52629025-chr15:52639618..52642359,2	MCF-7	breast:
5	chr15:52581186..52583538-chr15:52625731..52628644,3	MCF-7	breast:
6	chr15:52628155..52629955-chr15:53015410..53018106,2	MCF-7	breast:
7	chr15:52626840..52629585-chr15:52633186..52635414,2	MCF-7	breast:
8	chr15:52584751..52588382-chr15:52628094..52631977,4	MCF-7	breast:
9	chr15:52627118..52631838-chr15:52818681..52822892,5	MCF-7	breast:
10	chr15:52623711..52629622-chr15:52857897..52863465,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000128989	Chromatin interaction
ENSG00000128833	Chromatin interaction
ENSG00000197535	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10444827	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10851513	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11633035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11637651	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638118	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638675	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12593858	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12906271	0.90[YRI][hapmap]
rs1534201	0.81[ASN][1000 genomes]
rs1615028	1.00[CHB][hapmap]
rs1626180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1632403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[ASN][1000 genomes]
rs1669859	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs1669871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1669875	0.97[ASN][1000 genomes]
rs1669876	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs1693500	1.00[CHB][hapmap]
rs1693521	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap]
rs1724586	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs1724613	1.00[CHB][hapmap]
rs1917972	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1967624	0.88[ASN][1000 genomes]
rs2414140	0.91[YRI][hapmap]
rs2444012	0.88[ASN][1000 genomes]
rs2444014	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs2444017	0.81[ASN][1000 genomes]
rs2600901	0.81[ASN][1000 genomes]
rs2693459	1.00[ASN][1000 genomes]
rs2693467	1.00[CHB][hapmap]
rs62015995	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62015997	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62016004	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62016006	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6493553	0.81[YRI][hapmap]
rs8031817	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8035121	0.82[YRI][hapmap]
rs8037882	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52595800-52628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr15:52597800-52629600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:52597800-52643400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr15:52600800-52646600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:52601000-52643400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr15:52607800-52657800	Weak transcription	Small Intestine	intestine
7	chr15:52608600-52629200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:52609800-52677600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:52610000-52643400	Weak transcription	Placenta	Placenta
10	chr15:52611400-52629400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:52611600-52629800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:52611600-52650200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:52611800-52675800	Weak transcription	Gastric	stomach
14	chr15:52613000-52642600	Weak transcription	Colon Smooth Muscle	Colon
15	chr15:52613600-52666600	Weak transcription	Right Ventricle	heart
16	chr15:52614800-52642600	Weak transcription	Esophagus	oesophagus
17	chr15:52614800-52653200	Weak transcription	Colonic Mucosa	Colon
18	chr15:52616800-52631800	Weak transcription	Fetal Stomach	stomach
19	chr15:52619200-52632000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:52619600-52632000	Weak transcription	Brain Germinal Matrix	brain
21	chr15:52619800-52628600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:52619800-52640600	Weak transcription	Left Ventricle	heart
23	chr15:52619800-52641200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:52620000-52629000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr15:52620000-52632000	Weak transcription	Lung	lung
26	chr15:52620000-52652200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr15:52620200-52629600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr15:52620600-52659200	Weak transcription	Fetal Lung	lung
29	chr15:52621200-52666600	Weak transcription	Fetal Brain Male	brain
30	chr15:52621800-52640200	Weak transcription	Fetal Brain Female	brain
31	chr15:52621800-52662200	Weak transcription	Psoas Muscle	Psoas
32	chr15:52622000-52629600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:52622200-52629600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr15:52622200-52631800	Weak transcription	Fetal Muscle Leg	muscle
35	chr15:52622400-52629400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr15:52622400-52631800	Weak transcription	Spleen	Spleen
37	chr15:52622400-52632000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:52622400-52632000	Weak transcription	Pancreas	Pancrea
39	chr15:52622400-52636000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:52622600-52631200	Weak transcription	Ovary	ovary
41	chr15:52622600-52632000	Weak transcription	Aorta	Aorta
42	chr15:52622600-52632000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr15:52622800-52628800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr15:52622800-52628800	Weak transcription	HSMMtube	muscle
45	chr15:52623800-52644200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:52624000-52628800	Weak transcription	Brain Substantia Nigra	brain
47	chr15:52624000-52629600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr15:52624200-52628600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr15:52624200-52629400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr15:52624200-52629800	Weak transcription	Fetal Thymus	thymus

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