Variant report
| Variant | rs2455253 |
|---|---|
| Chromosome Location | chr5:36483040-36483041 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | TEAD4 | chr5:36482857-36483399 | ECC-1 | luminal epithelium: | n/a | n/a |
| 2 | TEAD4 | chr5:36482837-36483443 | ECC-1 | luminal epithelium: | n/a | n/a |
| 3 | EP300 | chr5:36482781-36483529 | ECC-1 | luminal epithelium: | n/a | chr5:36483083-36483093 chr5:36482830-36482844 |
| 4 | FOXA1 | chr5:36482976-36483230 | ECC-1 | luminal epithelium: | n/a | n/a |
| 5 | NFIC | chr5:36482775-36483499 | ECC-1 | luminal epithelium: | n/a | n/a |
| 6 | NFIC | chr5:36482747-36483324 | ECC-1 | luminal epithelium: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNA5SP181 | TF binding region |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs12054904 | 1.00[JPT][hapmap] |
| rs16903085 | 1.00[ASN][1000 genomes] |
| rs2455247 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2455248 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2455249 | 1.00[ASN][1000 genomes] |
| rs2455250 | 1.00[ASN][1000 genomes] |
| rs2455254 | 0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
| rs2468501 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2468531 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2468532 | 0.80[ASW][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes] |
| rs6868930 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6885914 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
