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Variant report
Variant
rs2468532
Chromosome Location
chr5:36482830-36482831
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:6)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
CEBPB
chr5:36482704-36482904
HepG2
liver:
n/a
chr5:36482832-36482845
chr5:36482833-36482844
2
EP300
chr5:36482781-36483529
ECC-1
luminal epithelium:
n/a
chr5:36483083-36483093
chr5:36482830-36482844
3
NFIC
chr5:36482775-36483499
ECC-1
luminal epithelium:
n/a
n/a
4
CEBPB
chr5:36482798-36482874
Hela-S3
cervix:
n/a
chr5:36482832-36482845
chr5:36482833-36482844
5
CEBPB
chr5:36482699-36482950
IMR90
lung:
n/a
chr5:36482832-36482845
chr5:36482833-36482844
6
NFIC
chr5:36482747-36483324
ECC-1
luminal epithelium:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
RNA5SP181
TF binding region
Extended variants information (count: 2 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:2)
rs_ID
r
2
[population]
rs2455253
0.80[ASW][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2455254
0.88[GIH][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links