Variant report

Variant	rs2461848
Chromosome Location	chr5:154162916-154162917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154154220..154157426-chr5:154161456..154164339,3	MCF-7	breast:
2	chr5:154160953..154164560-chr5:154213989..154217454,3	K562	blood:
3	chr5:154161718..154166122-chr5:154172267..154174755,4	MCF-7	breast:
4	chr5:154069246..154072134-chr5:154161988..154164384,2	K562	blood:
5	chr1:152014558..152016795-chr5:154161907..154163941,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170271	Chromatin interaction
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11750475	1.00[ASW][hapmap];0.88[CEU][hapmap];0.85[MEX][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2560040	0.87[CEU][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs35879162	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830521	chr5:154147567-154244266	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv965536	chr5:154155200-154163441	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154151600-154163000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:154151600-154163400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr5:154151600-154171200	Weak transcription	Fetal Brain Male	brain
4	chr5:154152600-154168200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr5:154152600-154168400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr5:154156000-154163400	Weak transcription	Brain Germinal Matrix	brain
7	chr5:154157800-154164200	Enhancers	Liver	Liver
8	chr5:154157800-154168000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:154157800-154168200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr5:154157800-154168200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr5:154157800-154168400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr5:154158000-154163800	Enhancers	Duodenum Mucosa	Duodenum
13	chr5:154158000-154164200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr5:154158000-154168200	Enhancers	Left Ventricle	heart
15	chr5:154158000-154168400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr5:154158200-154168200	Enhancers	Spleen	Spleen
17	chr5:154158800-154168200	Enhancers	Pancreas	Pancrea
18	chr5:154159000-154166800	Weak transcription	HUVEC	blood vessel
19	chr5:154159000-154168000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr5:154159200-154163200	Weak transcription	NH-A	brain
21	chr5:154159400-154164000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:154159400-154167800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr5:154159400-154168200	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr5:154159600-154168200	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr5:154159800-154167400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr5:154159800-154168400	Strong transcription	Dnd41	blood
27	chr5:154160000-154164800	Weak transcription	Hela-S3	cervix
28	chr5:154160200-154163000	Enhancers	HepG2	liver
29	chr5:154160200-154163400	Weak transcription	Fetal Thymus	thymus
30	chr5:154160400-154168200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr5:154160600-154164600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr5:154160600-154165000	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr5:154160600-154165000	Enhancers	Small Intestine	intestine
34	chr5:154161200-154163000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr5:154161200-154164000	Enhancers	Muscle Satellite Cultured Cells	--
36	chr5:154161200-154165200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr5:154161200-154167600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr5:154161200-154168000	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr5:154161200-154168000	Enhancers	Stomach Mucosa	stomach
40	chr5:154161200-154168400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr5:154161200-154168600	Enhancers	Fetal Heart	heart
42	chr5:154161400-154163000	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr5:154161400-154163000	Enhancers	HSMM	muscle
44	chr5:154161400-154163200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr5:154161400-154164000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr5:154161400-154164000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr5:154161400-154164400	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr5:154161400-154164600	Enhancers	H1 Cell Line	embryonic stem cell
49	chr5:154161400-154164800	Enhancers	Adipose Nuclei	Adipose
50	chr5:154161400-154165000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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