Variant report

Variant	rs35879162
Chromosome Location	chr5:154142697-154142698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154133078..154137845-chr5:154142563..154149366,9	MCF-7	breast:
2	chr5:154026946..154029914-chr5:154142078..154144700,2	K562	blood:
3	chr5:154034090..154035820-chr5:154141862..154143840,2	K562	blood:
4	chr5:154141399..154144040-chr5:154148555..154150698,2	MCF-7	breast:
5	chr5:154032703..154035820-chr5:154141862..154144774,3	K562	blood:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11750475	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2461848	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2560040	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021153	chr5:154099869-154147970	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154137800-154144000	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr5:154138200-154146000	Weak transcription	Placenta	Placenta
3	chr5:154138200-154151400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr5:154138200-154156000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr5:154138400-154147800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:154138800-154150000	Weak transcription	HSMM	muscle
7	chr5:154139000-154142800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:154139000-154147200	Weak transcription	NH-A	brain
9	chr5:154139000-154149800	Weak transcription	NHLF	lung
10	chr5:154139200-154145600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:154139400-154145400	Weak transcription	Fetal Kidney	kidney
12	chr5:154139600-154143200	Enhancers	Right Atrium	heart
13	chr5:154139600-154148600	Weak transcription	Fetal Intestine Large	intestine
14	chr5:154139800-154148800	Weak transcription	Fetal Brain Male	brain
15	chr5:154140000-154145800	Weak transcription	Fetal Stomach	stomach
16	chr5:154140200-154149200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr5:154140800-154146000	Weak transcription	NHDF-Ad	bronchial
18	chr5:154141000-154144400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:154141000-154144800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr5:154141000-154145600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr5:154141000-154145600	Weak transcription	Osteobl	bone
22	chr5:154141000-154145800	Weak transcription	Fetal Lung	lung
23	chr5:154141000-154148000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr5:154141000-154150000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr5:154141200-154143200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr5:154141200-154144400	Weak transcription	Spleen	Spleen
27	chr5:154141200-154144600	Weak transcription	Gastric	stomach
28	chr5:154141200-154144600	Weak transcription	Small Intestine	intestine
29	chr5:154141200-154144800	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr5:154141200-154145400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr5:154141200-154145600	Weak transcription	NHEK	skin
32	chr5:154141200-154145800	Weak transcription	HMEC	breast
33	chr5:154141200-154146800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr5:154141200-154148800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:154141200-154150600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr5:154141200-154151000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr5:154141400-154142800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr5:154141400-154142800	Weak transcription	Fetal Intestine Small	intestine
39	chr5:154141400-154143000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr5:154141400-154143000	Weak transcription	Dnd41	blood
41	chr5:154141400-154144400	Weak transcription	Fetal Thymus	thymus
42	chr5:154141400-154144600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr5:154141400-154144600	Weak transcription	Brain Anterior Caudate	brain
44	chr5:154141400-154144600	Weak transcription	Fetal Muscle Leg	muscle
45	chr5:154141400-154144600	Weak transcription	Thymus	Thymus
46	chr5:154141400-154145000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr5:154141400-154145800	Weak transcription	Fetal Brain Female	brain
48	chr5:154141400-154146000	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr5:154141400-154146400	Weak transcription	HUVEC	blood vessel
50	chr5:154141400-154146800	Enhancers	Primary T helper cells PMA-I stimulated	--

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