Variant report
| Variant | rs2463310 |
|---|---|
| Chromosome Location | chr6:114064232-114064233 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs13209042 | 0.95[CHB][hapmap] |
| rs1997215 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2498743 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2498749 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2810179 | 0.95[CHB][hapmap] |
| rs2810195 | 0.95[CHB][hapmap] |
| rs34777588 | 0.86[ASN][1000 genomes] |
| rs4574672 | 0.83[ASN][1000 genomes] |
| rs55705700 | 0.86[ASN][1000 genomes] |
| rs6568807 | 0.83[ASN][1000 genomes] |
| rs6918103 | 0.84[ASN][1000 genomes] |
| rs6923574 | 0.83[ASN][1000 genomes] |
| rs6940434 | 0.84[ASN][1000 genomes] |
| rs773673 | 0.88[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs773685 | 0.89[CEU][hapmap];0.95[JPT][hapmap] |
| rs7760821 | 0.84[ASN][1000 genomes] |
| rs7765004 | 0.83[ASN][1000 genomes] |
| rs9372374 | 0.82[ASN][1000 genomes] |
| rs9372376 | 0.82[ASN][1000 genomes] |
| rs9374426 | 0.83[ASN][1000 genomes] |
| rs9384882 | 0.84[ASN][1000 genomes] |
| rs9387174 | 0.83[ASN][1000 genomes] |
| rs9387176 | 0.83[ASN][1000 genomes] |
| rs9387177 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs9400667 | 0.83[ASN][1000 genomes] |
| rs9400676 | 0.95[CHB][hapmap] |
| rs959211 | 0.95[CHB][hapmap] |
| rs963884 | 0.95[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021774 | chr6:114063971-114407280 | Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 60 gene(s) | inside rSNPs | diseases |
| 2 | nsv538422 | chr6:114063971-114407280 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 60 gene(s) | inside rSNPs | diseases |
| 3 | esv3397816 | chr6:114064184-114066207 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:114064000-114065800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 2 | chr6:114064200-114066200 | Weak transcription | Fetal Heart | heart |
