Variant report

Variant	rs773685
Chromosome Location	chr6:114023418-114023419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1997215	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2498743	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2498749	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2588026	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2695450	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs773673	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9372372	0.82[EUR][1000 genomes]
rs9387177	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981079	chr6:114021110-114039103	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114022000-114024000	Enhancers	Stomach Mucosa	stomach
2	chr6:114022600-114023800	Weak transcription	Pancreas	Pancrea
3	chr6:114023000-114024000	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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