Variant report

Variant	rs2695450
Chromosome Location	chr6:114029800-114029801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1997215	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2498743	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2498749	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2588026	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs773673	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs773685	0.92[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9387177	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981079	chr6:114021110-114039103	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114024000-114029800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:114028800-114032200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:114029200-114031400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:114029800-114030200	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr6:114029800-114030400	Enhancers	Colonic Mucosa	Colon
6	chr6:114029800-114031200	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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