Variant report

Variant	rs2464564
Chromosome Location	chr12:48891237-48891238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:48888880..48891853-chr12:48895392..48897603,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11168573	0.82[ASN][1000 genomes]
rs11168584	0.82[ASN][1000 genomes]
rs11168601	0.86[ASN][1000 genomes]
rs11608260	0.86[ASN][1000 genomes]
rs11612896	0.82[ASN][1000 genomes]
rs11829869	0.86[ASN][1000 genomes]
rs11830068	0.82[ASN][1000 genomes]
rs11830262	0.82[ASN][1000 genomes]
rs11832205	0.82[ASN][1000 genomes]
rs11832311	0.86[ASN][1000 genomes]
rs11833650	0.82[ASN][1000 genomes]
rs11834979	0.82[ASN][1000 genomes]
rs11836257	0.82[ASN][1000 genomes]
rs11837374	0.82[ASN][1000 genomes]
rs12424940	0.82[ASN][1000 genomes]
rs17123105	0.86[ASN][1000 genomes]
rs17123106	0.86[ASN][1000 genomes]
rs17123108	0.86[ASN][1000 genomes]
rs2068293	0.86[ASN][1000 genomes]
rs2464563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2468348	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2468349	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2468350	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2705133	0.93[AFR][1000 genomes]
rs2705135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2705160	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2705165	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2731074	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2731085	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34400124	0.82[ASN][1000 genomes]
rs4265629	0.86[ASN][1000 genomes]
rs4344535	0.86[ASN][1000 genomes]
rs4500527	0.86[ASN][1000 genomes]
rs4620769	0.86[ASN][1000 genomes]
rs4760713	0.81[ASN][1000 genomes]
rs56796388	0.82[ASN][1000 genomes]
rs72644858	0.82[ASN][1000 genomes]
rs72644859	0.82[ASN][1000 genomes]
rs72644862	0.81[ASN][1000 genomes]
rs72644863	0.82[ASN][1000 genomes]
rs72644864	0.82[ASN][1000 genomes]
rs72644865	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv975416	chr12:48882416-48893049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48887000-48891800	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links