Variant report
| Variant | rs2705160 |
|---|---|
| Chromosome Location | chr12:48901156-48901157 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11168573 | 0.81[ASN][1000 genomes] |
| rs11168601 | 0.84[ASN][1000 genomes] |
| rs11608260 | 0.84[ASN][1000 genomes] |
| rs11829869 | 0.84[ASN][1000 genomes] |
| rs11832311 | 0.84[ASN][1000 genomes] |
| rs17123105 | 0.84[ASN][1000 genomes] |
| rs17123106 | 0.84[ASN][1000 genomes] |
| rs17123108 | 0.84[ASN][1000 genomes] |
| rs2068293 | 0.84[ASN][1000 genomes] |
| rs2464563 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2464564 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2468348 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2468349 | 0.82[ASN][1000 genomes] |
| rs2468350 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2705133 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs2705135 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2705157 | 0.81[AFR][1000 genomes] |
| rs2705165 | 0.83[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2731066 | 0.93[YRI][hapmap] |
| rs2731074 | 0.83[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2731085 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2731092 | 0.82[YRI][hapmap] |
| rs2731099 | 0.82[YRI][hapmap] |
| rs4265629 | 0.84[ASN][1000 genomes] |
| rs4344535 | 0.84[ASN][1000 genomes] |
| rs4500527 | 0.84[ASN][1000 genomes] |
| rs4620769 | 0.84[ASN][1000 genomes] |
| rs4760713 | 0.81[ASN][1000 genomes] |
| rs72644865 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427911 | chr12:48670336-48979396 | Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:48900800-48901400 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
