Variant report
| Variant | rs2705157 |
|---|---|
| Chromosome Location | chr12:48905551-48905552 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000197376 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10875832 | 0.90[EUR][1000 genomes] |
| rs11168572 | 0.86[EUR][1000 genomes] |
| rs2464566 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2468349 | 0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2705160 | 0.81[AFR][1000 genomes] |
| rs2705165 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2712611 | 0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2731072 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2731074 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2731085 | 0.81[AFR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427911 | chr12:48670336-48979396 | Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
