Variant report

Variant	rs2731066
Chromosome Location	chr12:48898563-48898564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11168573	0.82[ASN][1000 genomes]
rs11168584	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs11168601	0.85[ASN][1000 genomes]
rs11608260	0.85[ASN][1000 genomes]
rs11612896	0.94[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs11829869	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs11830068	0.81[ASN][1000 genomes]
rs11830262	0.81[ASN][1000 genomes]
rs11832205	0.81[ASN][1000 genomes]
rs11832311	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs11833650	0.81[ASN][1000 genomes]
rs11834979	0.81[ASN][1000 genomes]
rs11836257	0.81[ASN][1000 genomes]
rs11837374	0.81[ASN][1000 genomes]
rs12424940	0.81[ASN][1000 genomes]
rs17123105	0.94[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs17123106	0.85[ASN][1000 genomes]
rs17123108	0.89[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs2068293	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2464563	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2464564	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2468348	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2468349	0.84[ASN][1000 genomes]
rs2468350	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2705133	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs2705135	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2705157	0.81[AFR][1000 genomes]
rs2705160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2705165	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2731074	0.94[CHB][hapmap];0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2731085	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2731092	0.81[YRI][hapmap]
rs34400124	0.81[ASN][1000 genomes]
rs4146339	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs4146340	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs4237857	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs4265629	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs4344535	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs4500527	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs4620769	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs4760712	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs4760713	0.83[ASN][1000 genomes]
rs56796388	0.81[ASN][1000 genomes]
rs72644858	0.81[ASN][1000 genomes]
rs72644859	0.81[ASN][1000 genomes]
rs72644863	0.81[ASN][1000 genomes]
rs72644864	0.81[ASN][1000 genomes]
rs72644865	0.82[ASN][1000 genomes]
rs7956679	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs7966826	0.94[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links