Variant report

Variant	rs2465873
Chromosome Location	chr6:161299972-161299973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1317216	0.82[EUR][1000 genomes]
rs1937480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1937483	0.96[ASN][1000 genomes]
rs2465834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2465841	0.96[ASN][1000 genomes]
rs2465842	0.93[ASN][1000 genomes]
rs2465843	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2465844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2465854	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2465872	0.99[ASN][1000 genomes]
rs2465874	0.99[ASN][1000 genomes]
rs2465875	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2489935	0.82[EUR][1000 genomes]
rs2489939	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2489944	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2489945	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2489946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2489947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57196352	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57300662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9347466	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9365229	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1837673	chr6:161216608-161318009	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161294200-161304200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:161296000-161313000	Weak transcription	Right Atrium	heart
3	chr6:161297600-161300000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:161297800-161300000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:161298000-161303800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:161298200-161305200	Weak transcription	Pancreas	Pancrea
7	chr6:161298800-161302400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:161298800-161305000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:161299200-161301400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:161299200-161304200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:161299400-161302400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:161299600-161301400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:161299600-161302000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:161299600-161302200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:161299800-161302000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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