Variant report

Variant	rs2489939
Chromosome Location	chr6:161283829-161283830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161282793..161285621-chr6:161332343..161335165,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1247537	0.83[EUR][1000 genomes]
rs1247538	0.83[EUR][1000 genomes]
rs1247540	0.83[EUR][1000 genomes]
rs1317216	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1937480	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1937483	0.83[ASN][1000 genomes]
rs2465834	0.81[EUR][1000 genomes]
rs2465841	0.83[ASN][1000 genomes]
rs2465843	0.81[ASN][1000 genomes]
rs2465844	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2465854	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2465872	0.81[ASN][1000 genomes]
rs2465873	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2465874	0.81[ASN][1000 genomes]
rs2489935	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2489944	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2489945	0.81[ASN][1000 genomes]
rs2489946	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2489947	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2997092	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57196352	0.82[ASN][1000 genomes]
rs57300662	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62435283	0.82[EUR][1000 genomes]
rs9365229	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1837673	chr6:161216608-161318009	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886816	chr6:161225303-161286450	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161281200-161284800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:161282000-161285400	Weak transcription	Right Atrium	heart

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