Variant report

Variant	rs2470355
Chromosome Location	chr15:57927505-57927506
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57834554..57835358-chr15:57927382..57928092,2	MCF-7	breast:
2	chr15:57911096..57913539-chr15:57927468..57930271,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1814313	0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs2042697	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2554043	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2733593	0.83[ASN][1000 genomes]
rs2733595	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4774978	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs890271	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv94840	chr15:57922185-57931412	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57894400-57938200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr15:57900600-57941600	Weak transcription	Colonic Mucosa	Colon
3	chr15:57904400-57935200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:57904600-57936400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:57905000-57940800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:57912200-57939200	Weak transcription	Placenta	Placenta
7	chr15:57912800-57931600	Weak transcription	Spleen	Spleen
8	chr15:57916600-57927600	Strong transcription	Fetal Intestine Large	intestine
9	chr15:57917600-57935400	Weak transcription	Stomach Mucosa	stomach
10	chr15:57918400-57927800	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:57919400-57946800	Weak transcription	Fetal Lung	lung
12	chr15:57919400-57959400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr15:57920000-57931600	Weak transcription	Aorta	Aorta
14	chr15:57922000-57928000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr15:57923400-57928400	Genic enhancers	Fetal Heart	heart
16	chr15:57923600-57939200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:57924000-57938200	Strong transcription	Adipose Nuclei	Adipose
18	chr15:57924200-57934400	Weak transcription	Fetal Muscle Leg	muscle
19	chr15:57924600-57929800	Weak transcription	Small Intestine	intestine
20	chr15:57925400-57939200	Weak transcription	HUVEC	blood vessel
21	chr15:57925600-57929800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:57925800-57928200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr15:57926000-57936000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:57926200-57927800	Genic enhancers	Left Ventricle	heart
25	chr15:57926200-57927800	Enhancers	Right Atrium	heart
26	chr15:57926200-57928800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr15:57926200-57931200	Weak transcription	Fetal Stomach	stomach
28	chr15:57926200-57933600	Weak transcription	Liver	Liver
29	chr15:57926400-57927600	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr15:57926600-57928200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr15:57926800-57929600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr15:57926800-57929800	Weak transcription	Gastric	stomach
33	chr15:57927000-57927800	Enhancers	Pancreas	Pancrea
34	chr15:57927000-57928200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr15:57927000-57928400	Enhancers	Stomach Smooth Muscle	stomach
36	chr15:57927000-57928800	Enhancers	Fetal Brain Female	brain
37	chr15:57927000-57929000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:57927000-57931600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr15:57927200-57928600	Enhancers	Ovary	ovary
40	chr15:57927400-57927600	Genic enhancers	Fetal Intestine Small	intestine
41	chr15:57927400-57927600	Genic enhancers	Rectal Mucosa Donor 31	rectum
42	chr15:57927400-57927800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:57927400-57928000	Enhancers	Brain Germinal Matrix	brain
44	chr15:57927400-57929000	Weak transcription	Psoas Muscle	Psoas
45	chr15:57927400-57930000	Weak transcription	Right Ventricle	heart
46	chr15:57927400-57931400	Weak transcription	Esophagus	oesophagus
47	chr15:57927400-57939800	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links