Variant report

Variant	rs2733593
Chromosome Location	chr15:57924586-57924587
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11637944	0.82[JPT][hapmap]
rs11638184	0.82[JPT][hapmap]
rs16977629	0.82[JPT][hapmap]
rs1814313	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2042697	0.83[CEU][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2470355	0.83[ASN][1000 genomes]
rs2554043	0.82[CEU][hapmap];0.85[ASN][1000 genomes]
rs2733595	0.83[ASN][1000 genomes]
rs890271	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv94840	chr15:57922185-57931412	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57894400-57938200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr15:57900600-57941600	Weak transcription	Colonic Mucosa	Colon
3	chr15:57904400-57935200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:57904600-57936400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:57905000-57940800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:57912200-57939200	Weak transcription	Placenta	Placenta
7	chr15:57912800-57931600	Weak transcription	Spleen	Spleen
8	chr15:57914800-57926600	Weak transcription	Hela-S3	cervix
9	chr15:57915600-57927400	Strong transcription	Fetal Intestine Small	intestine
10	chr15:57916600-57927600	Strong transcription	Fetal Intestine Large	intestine
11	chr15:57917600-57935400	Weak transcription	Stomach Mucosa	stomach
12	chr15:57918400-57927800	Weak transcription	Colon Smooth Muscle	Colon
13	chr15:57919400-57926200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr15:57919400-57946800	Weak transcription	Fetal Lung	lung
15	chr15:57919400-57959400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:57919600-57925800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr15:57919800-57926200	Weak transcription	Right Atrium	heart
18	chr15:57919800-57926200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:57919800-57927000	Strong transcription	Stomach Smooth Muscle	stomach
20	chr15:57919800-57927200	Weak transcription	Ovary	ovary
21	chr15:57920000-57924800	Weak transcription	HUVEC	blood vessel
22	chr15:57920000-57931600	Weak transcription	Aorta	Aorta
23	chr15:57920200-57926200	Weak transcription	Psoas Muscle	Psoas
24	chr15:57920400-57926800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr15:57921600-57925200	Genic enhancers	Left Ventricle	heart
26	chr15:57921600-57926200	Strong transcription	Fetal Stomach	stomach
27	chr15:57921600-57926800	Strong transcription	Gastric	stomach
28	chr15:57921600-57927400	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr15:57922000-57928000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr15:57922200-57925600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr15:57922200-57926400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr15:57923400-57924800	Genic enhancers	Pancreas	Pancrea
33	chr15:57923400-57928400	Genic enhancers	Fetal Heart	heart
34	chr15:57923600-57927400	Genic enhancers	Right Ventricle	heart
35	chr15:57923600-57939200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr15:57924000-57925600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr15:57924000-57927400	Strong transcription	Esophagus	oesophagus
38	chr15:57924000-57938200	Strong transcription	Adipose Nuclei	Adipose
39	chr15:57924200-57925800	Weak transcription	Lung	lung
40	chr15:57924200-57934400	Weak transcription	Fetal Muscle Leg	muscle
41	chr15:57924400-57924600	Active TSS	Small Intestine	intestine
42	chr15:57924400-57926000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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