Variant report

Variant	rs2470705
Chromosome Location	chr3:105663055-105663056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12486371	1.00[CHB][hapmap]
rs1867193	1.00[ASN][1000 genomes]
rs2202302	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455882	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455887	0.85[EUR][1000 genomes]
rs2470707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772512	1.00[CHB][hapmap]
rs58882222	0.81[EUR][1000 genomes]
rs6437623	1.00[CHB][hapmap]
rs6778745	1.00[CHB][hapmap]
rs6791765	1.00[CHB][hapmap]
rs6796362	1.00[CHB][hapmap]
rs7650147	1.00[CHB][hapmap]
rs9820060	1.00[CHB][hapmap]
rs9880744	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105657600-105663600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:105662600-105663200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:105662600-105663400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:105662600-105663400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:105662600-105663400	Enhancers	NH-A	brain
6	chr3:105662600-105663400	Enhancers	Osteobl	bone
7	chr3:105662600-105663600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:105662600-105663800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:105662600-105663800	Enhancers	HMEC	breast
10	chr3:105662600-105664400	Enhancers	HSMM	muscle
11	chr3:105662600-105664600	Enhancers	NHEK	skin
12	chr3:105662600-105664600	Enhancers	NHLF	lung
13	chr3:105662600-105667200	Enhancers	NHDF-Ad	bronchial
14	chr3:105663000-105663400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:105663000-105664000	Enhancers	HSMMtube	muscle
16	chr3:105663000-105664200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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