Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12485832	0.86[ASN][1000 genomes]
rs12486371	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12487841	0.86[ASN][1000 genomes]
rs12496588	0.82[CEU][hapmap]
rs2202302	0.80[EUR][1000 genomes]
rs2455881	0.85[EUR][1000 genomes]
rs2455882	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2470705	0.85[EUR][1000 genomes]
rs2470707	0.85[EUR][1000 genomes]
rs3772512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs58882222	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6437623	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6778745	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6791765	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6793018	0.86[ASN][1000 genomes]
rs6796362	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs72997629	0.86[ASN][1000 genomes]
rs72997684	0.86[ASN][1000 genomes]
rs7639888	0.80[CEU][hapmap]
rs7650147	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9820060	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9841798	0.86[ASN][1000 genomes]
rs9876110	0.80[CEU][hapmap]
rs9880744	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105642800-105651000	Weak transcription	Placenta	Placenta
2	chr3:105647800-105650000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:105647800-105650200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:105647800-105650400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:105648000-105650200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:105648000-105650400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:105648600-105649200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:105648600-105650000	Enhancers	HUVEC	blood vessel
9	chr3:105649000-105650000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:105649000-105650000	Enhancers	Fetal Lung	lung
11	chr3:105649000-105654000	Weak transcription	NHDF-Ad	bronchial

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