Variant report

Variant	rs9876110
Chromosome Location	chr3:105541246-105541247
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105539575..105542989-chr3:105543009..105546955,3	K562	blood:
2	chr3:105535705..105538225-chr3:105539955..105541947,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1042852	0.84[ASW][hapmap]
rs11919893	0.83[CEU][hapmap]
rs12486371	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12487841	0.87[AMR][1000 genomes]
rs12496588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12497428	0.83[CEU][hapmap]
rs12632980	0.83[CEU][hapmap]
rs13090949	0.83[CEU][hapmap]
rs13317635	0.84[ASW][hapmap]
rs13433776	0.83[CEU][hapmap]
rs1443108	0.92[ASW][hapmap]
rs16851443	0.91[CHD][hapmap]
rs16851492	0.82[CHD][hapmap]
rs1867189	0.92[ASW][hapmap]
rs2089092	0.82[ASN][1000 genomes]
rs2301043	0.92[ASW][hapmap]
rs2305035	0.92[ASW][hapmap]
rs2305036	0.92[ASW][hapmap]
rs3772512	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3772515	0.92[ASW][hapmap]
rs56344829	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6437616	0.88[CEU][hapmap]
rs6437623	0.90[CEU][hapmap];0.89[AMR][1000 genomes]
rs6778745	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6780432	0.83[CEU][hapmap]
rs6791765	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6796362	1.00[GIH][hapmap];0.90[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs72997629	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7619647	0.92[ASW][hapmap]
rs7624530	0.84[ASW][hapmap]
rs7634195	0.83[CEU][hapmap]
rs7638504	0.83[CEU][hapmap]
rs7639888	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7641825	0.92[ASW][hapmap];0.94[YRI][hapmap]
rs7649466	0.94[YRI][hapmap]
rs7650147	0.81[CEU][hapmap];0.89[AMR][1000 genomes]
rs894541	0.83[CEU][hapmap]
rs9657910	1.00[TSI][hapmap]
rs9811776	0.83[CEU][hapmap]
rs9814582	0.83[CEU][hapmap]
rs9820060	0.89[CEU][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9838755	0.83[CEU][hapmap]
rs9841798	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9872895	0.81[CEU][hapmap]
rs9880744	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9880861	0.92[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877309	chr3:105373836-105542435	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9876110	CBLB	cis	multi-tissue	Pritchard

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105483200-105555200	Weak transcription	Placenta	Placenta
2	chr3:105505000-105548200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:105511400-105566400	Weak transcription	Aorta	Aorta
4	chr3:105519200-105541600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:105521200-105546800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:105521400-105542000	Weak transcription	Fetal Stomach	stomach
7	chr3:105524600-105541600	Weak transcription	Right Atrium	heart
8	chr3:105526200-105541600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:105526200-105542400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:105528400-105541600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:105528400-105542000	Weak transcription	Pancreas	Pancrea
12	chr3:105528400-105543200	Weak transcription	Gastric	stomach
13	chr3:105528400-105553600	Weak transcription	Fetal Kidney	kidney
14	chr3:105528600-105542600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:105528800-105541600	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:105529000-105541600	Weak transcription	Fetal Lung	lung
17	chr3:105529000-105541800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:105529000-105542200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:105529000-105546600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr3:105530400-105541600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:105530400-105542000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:105530600-105541800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:105530800-105541800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:105531400-105546600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:105531600-105541800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:105531600-105541800	Weak transcription	HMEC	breast
27	chr3:105531600-105546400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:105532200-105541800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr3:105532200-105563000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:105532800-105542000	Weak transcription	HUVEC	blood vessel
31	chr3:105533600-105560600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr3:105533800-105570000	Weak transcription	Dnd41	blood
33	chr3:105534200-105566200	Weak transcription	Brain Germinal Matrix	brain
34	chr3:105534400-105546600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr3:105535600-105553800	Weak transcription	Fetal Brain Male	brain
36	chr3:105536600-105541600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr3:105536600-105543200	Weak transcription	Right Ventricle	heart
38	chr3:105537800-105546800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:105538800-105545000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:105539200-105542000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr3:105539200-105543200	Weak transcription	Lung	lung
42	chr3:105539200-105546200	Weak transcription	Esophagus	oesophagus
43	chr3:105539400-105541600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:105539400-105542000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr3:105539400-105542000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr3:105539400-105542000	Weak transcription	Left Ventricle	heart
47	chr3:105539400-105551600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:105539800-105544400	Enhancers	Stomach Mucosa	stomach
49	chr3:105540000-105541600	Enhancers	Duodenum Mucosa	Duodenum
50	chr3:105540000-105541800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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