Variant report

Variant	rs9872895
Chromosome Location	chr3:105528357-105528358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11919893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11926659	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12486371	0.81[CEU][hapmap]
rs12496588	0.83[CEU][hapmap]
rs12497428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12632980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13090949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13326550	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13433776	1.00[CEU][hapmap];0.80[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1503923	0.81[ASN][1000 genomes]
rs16851596	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16851705	0.86[ASN][1000 genomes]
rs16851706	0.83[ASN][1000 genomes]
rs2120103	0.89[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs2120104	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2399056	0.92[CEU][hapmap]
rs6437616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6766168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776593	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778745	0.81[CEU][hapmap]
rs6780432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6791765	0.81[CEU][hapmap]
rs7634195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7639888	0.81[CEU][hapmap]
rs894541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9811776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9837243	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9846445	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849559	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9876110	0.81[CEU][hapmap]
rs9880744	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877309	chr3:105373836-105542435	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105483200-105555200	Weak transcription	Placenta	Placenta
2	chr3:105505000-105548200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:105511400-105566400	Weak transcription	Aorta	Aorta
4	chr3:105512200-105534200	Weak transcription	Left Ventricle	heart
5	chr3:105515400-105539000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:105517800-105528400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:105519200-105541600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:105520800-105531400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:105521200-105530200	Weak transcription	HMEC	breast
10	chr3:105521200-105531200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:105521200-105536000	Weak transcription	Right Ventricle	heart
12	chr3:105521200-105546800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:105521400-105529200	Weak transcription	Psoas Muscle	Psoas
14	chr3:105521400-105530200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:105521400-105541200	Weak transcription	Fetal Muscle Leg	muscle
16	chr3:105521400-105542000	Weak transcription	Fetal Stomach	stomach
17	chr3:105521600-105530200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr3:105522200-105528400	Weak transcription	Fetal Heart	heart
19	chr3:105522400-105529800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr3:105522400-105533800	Weak transcription	Brain Germinal Matrix	brain
21	chr3:105522400-105541200	Weak transcription	Primary T cells from cord blood	blood
22	chr3:105523000-105530000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:105524000-105529000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:105524000-105530800	Weak transcription	NH-A	brain
25	chr3:105524200-105532200	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr3:105524600-105530000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:105524600-105530200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:105524600-105541600	Weak transcription	Right Atrium	heart
29	chr3:105525400-105528800	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr3:105525600-105540200	Weak transcription	NHLF	lung
31	chr3:105525800-105530200	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr3:105525800-105531200	Weak transcription	HSMM	muscle
33	chr3:105526000-105530400	Weak transcription	GM12878-XiMat	blood
34	chr3:105526000-105530400	Weak transcription	NHEK	skin
35	chr3:105526000-105531000	Weak transcription	HUVEC	blood vessel
36	chr3:105526200-105528400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:105526200-105530200	Weak transcription	NHDF-Ad	bronchial
38	chr3:105526200-105534000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr3:105526200-105541600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr3:105526200-105542400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr3:105526400-105530800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:105526400-105531000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr3:105526600-105528800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr3:105526800-105530200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:105527200-105528400	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr3:105527400-105528600	Enhancers	Muscle Satellite Cultured Cells	--
47	chr3:105527600-105529000	Enhancers	Fetal Intestine Large	intestine
48	chr3:105527600-105529000	Enhancers	Fetal Intestine Small	intestine
49	chr3:105527600-105529200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:105527600-105537800	Weak transcription	Primary B cells from cord blood	blood

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