Variant report

Variant	rs13326550
Chromosome Location	chr3:105511522-105511523
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11919893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926659	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497428	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12632980	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13090949	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13433776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1503923	0.81[ASN][1000 genomes]
rs16851596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16851705	0.84[ASN][1000 genomes]
rs16851706	0.83[ASN][1000 genomes]
rs2120103	0.90[ASN][1000 genomes]
rs2120104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6437616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6766168	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6776593	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6780432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634195	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7638504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9814582	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9837243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9838755	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9846445	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9849559	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9872895	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877309	chr3:105373836-105542435	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105482800-105517400	Weak transcription	Fetal Intestine Large	intestine
2	chr3:105483200-105555200	Weak transcription	Placenta	Placenta
3	chr3:105486800-105519000	Weak transcription	Esophagus	oesophagus
4	chr3:105489600-105525400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:105494400-105516200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:105495400-105517200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:105496400-105514000	Weak transcription	Lung	lung
8	chr3:105501800-105516600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr3:105505000-105527800	Weak transcription	Pancreas	Pancrea
10	chr3:105505000-105548200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:105505600-105517400	Weak transcription	Brain Substantia Nigra	brain
12	chr3:105506200-105516000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:105506600-105518200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:105507000-105511800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:105509000-105512200	Enhancers	Fetal Heart	heart
16	chr3:105509000-105515000	Weak transcription	Fetal Kidney	kidney
17	chr3:105509200-105513800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:105509200-105514000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr3:105509400-105511800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:105509400-105512000	Enhancers	NH-A	brain
21	chr3:105509400-105512200	Strong transcription	Primary B cells from cord blood	blood
22	chr3:105509400-105512200	Enhancers	Adipose Nuclei	Adipose
23	chr3:105509400-105512400	Enhancers	NHLF	lung
24	chr3:105509400-105512600	Enhancers	Colon Smooth Muscle	Colon
25	chr3:105509400-105513400	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr3:105509400-105513600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr3:105509600-105512200	Enhancers	HMEC	breast
28	chr3:105509600-105512400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr3:105509800-105511800	Weak transcription	Left Ventricle	heart
30	chr3:105509800-105512600	Enhancers	HSMM	muscle
31	chr3:105509800-105512800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:105509800-105527800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr3:105510000-105511600	Enhancers	Osteobl	bone
34	chr3:105510000-105517400	Weak transcription	Stomach Mucosa	stomach
35	chr3:105510200-105511600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr3:105510200-105511600	Weak transcription	Brain Hippocampus Middle	brain
37	chr3:105510200-105512000	Weak transcription	Fetal Stomach	stomach
38	chr3:105510200-105516400	Weak transcription	Primary T cells from cord blood	blood
39	chr3:105510400-105511600	Weak transcription	Brain Anterior Caudate	brain
40	chr3:105510600-105511600	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr3:105510600-105521200	Weak transcription	Fetal Brain Male	brain
42	chr3:105510800-105511800	Enhancers	Primary T cells fromperipheralblood	blood
43	chr3:105510800-105511800	Flanking Active TSS	A549	lung
44	chr3:105510800-105512200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:105510800-105513000	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr3:105511000-105511600	Enhancers	H1 Cell Line	embryonic stem cell
47	chr3:105511000-105511600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:105511000-105511600	Enhancers	Primary B cells from peripheral blood	blood
49	chr3:105511000-105511600	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr3:105511000-105511800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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