Variant report

Variant	rs6776593
Chromosome Location	chr3:105529247-105529248
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11919893	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11926659	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12497428	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12632980	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13090949	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13326550	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13433776	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1503923	0.81[ASN][1000 genomes]
rs16851596	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16851705	0.86[ASN][1000 genomes]
rs16851706	0.83[ASN][1000 genomes]
rs2120103	0.93[ASN][1000 genomes]
rs2120104	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6437616	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6766168	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780432	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7634195	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638504	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs894541	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9811776	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814582	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9837243	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838755	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9846445	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849559	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9872895	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877309	chr3:105373836-105542435	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105483200-105555200	Weak transcription	Placenta	Placenta
2	chr3:105505000-105548200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:105511400-105566400	Weak transcription	Aorta	Aorta
4	chr3:105512200-105534200	Weak transcription	Left Ventricle	heart
5	chr3:105515400-105539000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:105519200-105541600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:105520800-105531400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:105521200-105530200	Weak transcription	HMEC	breast
9	chr3:105521200-105531200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr3:105521200-105536000	Weak transcription	Right Ventricle	heart
11	chr3:105521200-105546800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:105521400-105530200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:105521400-105541200	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:105521400-105542000	Weak transcription	Fetal Stomach	stomach
15	chr3:105521600-105530200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr3:105522400-105529800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:105522400-105533800	Weak transcription	Brain Germinal Matrix	brain
18	chr3:105522400-105541200	Weak transcription	Primary T cells from cord blood	blood
19	chr3:105523000-105530000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr3:105524000-105530800	Weak transcription	NH-A	brain
21	chr3:105524200-105532200	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr3:105524600-105530000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:105524600-105530200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:105524600-105541600	Weak transcription	Right Atrium	heart
25	chr3:105525600-105540200	Weak transcription	NHLF	lung
26	chr3:105525800-105530200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr3:105525800-105531200	Weak transcription	HSMM	muscle
28	chr3:105526000-105530400	Weak transcription	GM12878-XiMat	blood
29	chr3:105526000-105530400	Weak transcription	NHEK	skin
30	chr3:105526000-105531000	Weak transcription	HUVEC	blood vessel
31	chr3:105526200-105530200	Weak transcription	NHDF-Ad	bronchial
32	chr3:105526200-105534000	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr3:105526200-105541600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr3:105526200-105542400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr3:105526400-105530800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:105526400-105531000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:105526800-105530200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:105527600-105537800	Weak transcription	Primary B cells from cord blood	blood
39	chr3:105527800-105530400	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr3:105527800-105530600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr3:105527800-105533600	Enhancers	Osteobl	bone
42	chr3:105528000-105529400	Enhancers	Liver	Liver
43	chr3:105528200-105530600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr3:105528400-105530200	Weak transcription	Hela-S3	cervix
45	chr3:105528400-105531200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:105528400-105541600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr3:105528400-105542000	Weak transcription	Pancreas	Pancrea
48	chr3:105528400-105543200	Weak transcription	Gastric	stomach
49	chr3:105528400-105553600	Weak transcription	Fetal Kidney	kidney
50	chr3:105528600-105530000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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