Variant report

Variant	rs16851705
Chromosome Location	chr3:105602594-105602595
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105595423..105598244-chr3:105600923..105603422,2	K562	blood:
2	chr3:105594821..105597024-chr3:105599746..105602672,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11919893	0.91[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11926659	0.84[ASN][1000 genomes]
rs12493071	0.98[AMR][1000 genomes]
rs12497428	0.90[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs12632980	0.90[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs13090949	0.91[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs13326550	0.84[ASN][1000 genomes]
rs13433776	0.83[ASN][1000 genomes]
rs1443100	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs1503923	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16851512	1.00[CEU][hapmap]
rs16851553	1.00[CEU][hapmap]
rs16851596	0.86[ASN][1000 genomes]
rs16851673	1.00[CEU][hapmap];0.93[AMR][1000 genomes]
rs16851706	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16851707	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs1814078	1.00[CEU][hapmap];0.93[AMR][1000 genomes]
rs1867194	1.00[CEU][hapmap]
rs2028598	1.00[CEU][hapmap]
rs2055558	0.87[AMR][1000 genomes]
rs2055559	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs2120103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2301028	1.00[CEU][hapmap]
rs2301034	1.00[CEU][hapmap]
rs2301035	1.00[CEU][hapmap]
rs3213928	1.00[CEU][hapmap]
rs35909361	0.86[AMR][1000 genomes]
rs3772525	1.00[CEU][hapmap]
rs4431143	0.96[AMR][1000 genomes]
rs4469007	1.00[CEU][hapmap];0.98[AMR][1000 genomes]
rs4894956	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs62255570	0.98[AMR][1000 genomes]
rs62255571	0.98[AMR][1000 genomes]
rs62255572	1.00[AMR][1000 genomes]
rs62255573	1.00[AMR][1000 genomes]
rs62255575	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62258160	0.98[AMR][1000 genomes]
rs6437616	0.89[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs6766168	0.84[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs6776593	0.86[ASN][1000 genomes]
rs6780432	0.90[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs6809776	1.00[CEU][hapmap]
rs7619706	1.00[CEU][hapmap]
rs7631219	1.00[CEU][hapmap]
rs7634195	0.91[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs7638504	0.90[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7641527	0.85[AMR][1000 genomes]
rs7650046	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs894541	0.91[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs9657903	1.00[AMR][1000 genomes]
rs9657924	1.00[CEU][hapmap]
rs971109	1.00[CEU][hapmap]
rs9811776	0.91[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs9814582	0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs9837243	0.86[ASN][1000 genomes]
rs9838755	0.90[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs9846445	0.86[ASN][1000 genomes]
rs9856147	1.00[CEU][hapmap]
rs9872895	0.89[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105601600-105602600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:105601800-105602800	Enhancers	Fetal Heart	heart
3	chr3:105601800-105603400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:105602000-105603600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:105602000-105603600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:105602000-105603600	Weak transcription	Adipose Nuclei	Adipose
7	chr3:105602000-105603800	Weak transcription	HUVEC	blood vessel
8	chr3:105602000-105604000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:105602000-105604000	Enhancers	Placenta	Placenta
10	chr3:105602000-105604600	Enhancers	NHDF-Ad	bronchial
11	chr3:105602000-105604800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:105602200-105603000	Enhancers	K562	blood
13	chr3:105602200-105603600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:105602200-105603600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr3:105602400-105604400	Enhancers	Hela-S3	cervix

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