Variant report

Variant	rs12493071
Chromosome Location	chr3:105604504-105604505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs12054270	0.85[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1443100	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1503923	0.98[AMR][1000 genomes]
rs16851512	1.00[CEU][hapmap];0.90[ASN][1000 genomes]
rs16851553	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs16851673	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16851705	0.98[AMR][1000 genomes]
rs16851706	0.98[AMR][1000 genomes]
rs16851707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1814078	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1867194	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2028598	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2028599	0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2055558	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2055559	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2120103	1.00[CEU][hapmap]
rs2120104	0.86[ASN][1000 genomes]
rs2301028	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2301034	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2301035	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs3213928	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs34360428	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35909361	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3772517	0.88[ASN][1000 genomes]
rs3772522	0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3772525	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs3821490	0.85[CHB][hapmap];0.87[ASN][1000 genomes]
rs4431143	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4469007	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894956	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62255570	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255571	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255572	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255573	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255575	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62256353	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62258160	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62261460	0.90[ASN][1000 genomes]
rs62261462	0.90[ASN][1000 genomes]
rs62261487	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62261489	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62261491	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62261492	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62261493	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62261495	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62261496	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62261497	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62261498	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62261499	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62261538	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62261539	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62263059	0.86[ASN][1000 genomes]
rs62263169	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62263170	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62264260	0.86[ASN][1000 genomes]
rs6809776	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs7619706	1.00[CEU][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7628896	0.90[ASN][1000 genomes]
rs7631219	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7641527	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7650046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs964173	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9657903	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9657924	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs971109	1.00[CEU][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9849559	0.86[ASN][1000 genomes]
rs9856147	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105602000-105604600	Enhancers	NHDF-Ad	bronchial
2	chr3:105602000-105604800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:105603600-105604600	Enhancers	Adipose Nuclei	Adipose
4	chr3:105603600-105604800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:105603800-105604800	Enhancers	HUVEC	blood vessel
6	chr3:105604200-105604800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:105604400-105604600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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