Variant report

Variant	rs62256353
Chromosome Location	chr3:105545175-105545176
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105539575..105542989-chr3:105543009..105546955,3	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs12054270	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12487349	0.84[ASN][1000 genomes]
rs12493071	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12493771	0.81[ASN][1000 genomes]
rs12632595	0.81[AFR][1000 genomes]
rs1443100	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16851512	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16851553	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16851673	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16851707	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1814078	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1867194	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2028598	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2028599	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2055558	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2055559	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2120103	0.92[AMR][1000 genomes]
rs2120104	0.90[ASN][1000 genomes]
rs2301028	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2301034	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2301035	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3213928	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34360428	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35909361	0.93[ASN][1000 genomes]
rs3772517	0.93[ASN][1000 genomes]
rs3772522	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3772525	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3821490	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4431143	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4469007	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4894956	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62255570	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62255571	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62255572	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62255573	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62255575	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62258160	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62261460	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62261462	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62261487	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62261489	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62261491	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62261492	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62261493	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62261495	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62261496	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62261497	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62261498	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62261499	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62261538	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62261539	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62263056	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62263057	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62263059	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62263169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62263170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62264260	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6809776	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7619706	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628896	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7631219	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7641527	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7650046	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs964173	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9657903	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9657924	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs971109	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849559	0.90[ASN][1000 genomes]
rs9856147	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105483200-105555200	Weak transcription	Placenta	Placenta
2	chr3:105505000-105548200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:105511400-105566400	Weak transcription	Aorta	Aorta
4	chr3:105521200-105546800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:105528400-105553600	Weak transcription	Fetal Kidney	kidney
6	chr3:105529000-105546600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr3:105531400-105546600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:105531600-105546400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:105532200-105563000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:105533600-105560600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:105533800-105570000	Weak transcription	Dnd41	blood
12	chr3:105534200-105566200	Weak transcription	Brain Germinal Matrix	brain
13	chr3:105534400-105546600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:105535600-105553800	Weak transcription	Fetal Brain Male	brain
15	chr3:105537800-105546800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:105539200-105546200	Weak transcription	Esophagus	oesophagus
17	chr3:105539400-105551600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:105540800-105569600	Weak transcription	Fetal Thymus	thymus
19	chr3:105541000-105554400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:105541400-105548000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:105541800-105553600	Weak transcription	Fetal Brain Female	brain
22	chr3:105542200-105546400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr3:105542200-105553600	Weak transcription	Liver	Liver
24	chr3:105542200-105554000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:105542400-105548200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:105542600-105546200	Weak transcription	GM12878-XiMat	blood
27	chr3:105542600-105548200	Weak transcription	Pancreas	Pancrea
28	chr3:105542600-105555400	Weak transcription	Brain Angular Gyrus	brain
29	chr3:105542600-105566000	Weak transcription	Fetal Stomach	stomach
30	chr3:105542800-105545600	Strong transcription	Primary B cells from cord blood	blood
31	chr3:105542800-105546400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:105542800-105546800	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:105542800-105554400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr3:105543000-105546400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr3:105543000-105546800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:105543000-105555600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:105543200-105546000	Weak transcription	Adipose Nuclei	Adipose
38	chr3:105543200-105546200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr3:105543200-105546400	Weak transcription	Right Atrium	heart
40	chr3:105543200-105546400	Weak transcription	HUVEC	blood vessel
41	chr3:105543200-105546600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr3:105543200-105546600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr3:105543200-105548400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr3:105543200-105550200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr3:105543200-105551600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:105543400-105546000	Weak transcription	A549	lung
47	chr3:105543400-105546200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr3:105543400-105546200	Weak transcription	K562	blood
49	chr3:105543400-105546400	Weak transcription	Ovary	ovary
50	chr3:105543400-105546800	Weak transcription	Psoas Muscle	Psoas

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