Variant report

Variant	rs1503923
Chromosome Location	chr3:105609588-105609589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11919893	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs11926659	0.81[ASN][1000 genomes]
rs12493071	0.98[AMR][1000 genomes]
rs12497428	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs12632980	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs13090949	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs13326550	0.81[ASN][1000 genomes]
rs1443100	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs16851512	1.00[CEU][hapmap]
rs16851553	1.00[CEU][hapmap]
rs16851596	0.81[ASN][1000 genomes]
rs16851673	1.00[CEU][hapmap];0.93[AMR][1000 genomes]
rs16851705	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16851706	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16851707	0.98[AMR][1000 genomes]
rs1814078	1.00[CEU][hapmap];0.93[AMR][1000 genomes]
rs1867194	1.00[CEU][hapmap]
rs2028598	1.00[CEU][hapmap]
rs2055558	0.87[AMR][1000 genomes]
rs2055559	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs2120103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2301028	1.00[CEU][hapmap]
rs2301034	1.00[CEU][hapmap]
rs2301035	1.00[CEU][hapmap]
rs3213928	1.00[CEU][hapmap]
rs35909361	0.82[AMR][1000 genomes]
rs3772525	1.00[CEU][hapmap]
rs4431143	0.96[AMR][1000 genomes]
rs4469007	1.00[CEU][hapmap];0.98[AMR][1000 genomes]
rs4894956	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs62255570	0.98[AMR][1000 genomes]
rs62255571	0.98[AMR][1000 genomes]
rs62255572	0.96[AMR][1000 genomes]
rs62255573	0.96[AMR][1000 genomes]
rs62255575	0.96[AMR][1000 genomes]
rs62258160	0.98[AMR][1000 genomes]
rs6437616	0.82[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs6766168	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs6776593	0.81[ASN][1000 genomes]
rs6780432	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs6809776	1.00[CEU][hapmap]
rs7619706	1.00[CEU][hapmap]
rs7631219	1.00[CEU][hapmap]
rs7634195	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs7638504	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs7641527	0.85[AMR][1000 genomes]
rs7650046	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs894541	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs9657903	0.96[AMR][1000 genomes]
rs9657924	1.00[CEU][hapmap]
rs971109	1.00[CEU][hapmap]
rs9811776	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs9814582	0.82[CHB][hapmap]
rs9837243	0.81[ASN][1000 genomes]
rs9838755	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs9846445	0.81[ASN][1000 genomes]
rs9856147	1.00[CEU][hapmap]
rs9872895	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105609200-105610000	Enhancers	Primary T cells from cord blood	blood
2	chr3:105609400-105610200	Enhancers	Primary T helper cells fromperipheralblood	blood

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