Variant report

Variant	rs9657910
Chromosome Location	chr3:105376995-105376996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12486371	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs1867193	1.00[ASN][1000 genomes]
rs34599304	1.00[ASN][1000 genomes]
rs34703606	1.00[ASN][1000 genomes]
rs3772512	1.00[CHB][hapmap]
rs56335326	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6437623	1.00[CHB][hapmap]
rs6778745	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs6791765	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs7639888	1.00[TSI][hapmap]
rs7650120	1.00[ASN][1000 genomes]
rs7650147	1.00[CHB][hapmap]
rs9820060	1.00[CHB][hapmap]
rs9876110	1.00[TSI][hapmap]
rs9880744	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv534224	chr3:105141696-105404293	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv829651	chr3:105203424-105402136	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv877306	chr3:105372196-105495841	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv877307	chr3:105373836-105465189	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv591242	chr3:105373836-105470134	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877308	chr3:105373836-105495841	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv877309	chr3:105373836-105542435	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105366000-105377200	Weak transcription	NHDF-Ad	bronchial
2	chr3:105367400-105377600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:105368800-105377600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:105368800-105388400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:105368800-105393400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:105371400-105377400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:105371400-105382200	Weak transcription	Lung	lung
8	chr3:105371800-105377200	Weak transcription	Fetal Stomach	stomach
9	chr3:105372000-105381800	Weak transcription	Pancreas	Pancrea
10	chr3:105372200-105377000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:105372200-105380800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:105372200-105387400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:105372400-105388000	Weak transcription	Stomach Mucosa	stomach
14	chr3:105373000-105377200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:105373000-105377600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:105373000-105381800	Weak transcription	Right Ventricle	heart
17	chr3:105373000-105387800	Weak transcription	Gastric	stomach
18	chr3:105373000-105419600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:105373400-105401600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:105373600-105419600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:105373800-105406200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:105374200-105388400	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:105374200-105392600	Weak transcription	Psoas Muscle	Psoas
24	chr3:105374400-105377000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr3:105374400-105377000	Weak transcription	Fetal Kidney	kidney
26	chr3:105374400-105388000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:105374600-105377000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:105374600-105377000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:105374600-105377000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr3:105374600-105377200	Weak transcription	Left Ventricle	heart
31	chr3:105374600-105377200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr3:105374600-105377400	Weak transcription	Ovary	ovary
33	chr3:105374800-105381000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr3:105374800-105392800	Weak transcription	Colon Smooth Muscle	Colon
35	chr3:105375000-105388000	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr3:105375000-105395600	Weak transcription	Brain Anterior Caudate	brain
37	chr3:105375200-105395400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr3:105375200-105395600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr3:105375400-105377000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr3:105375400-105377000	Weak transcription	Fetal Brain Female	brain
41	chr3:105375400-105377200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr3:105375400-105377200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr3:105375400-105377600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:105375400-105377600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr3:105375600-105377200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr3:105375600-105377200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr3:105375600-105377200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr3:105375600-105377200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr3:105375600-105377200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr3:105375600-105377200	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links