Variant report

Variant	rs56335326
Chromosome Location	chr3:105394465-105394466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105388597..105390954-chr3:105393490..105396667,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1867193	1.00[ASN][1000 genomes]
rs34599304	1.00[ASN][1000 genomes]
rs34703606	1.00[ASN][1000 genomes]
rs7650120	1.00[ASN][1000 genomes]
rs9657910	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv534224	chr3:105141696-105404293	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv829651	chr3:105203424-105402136	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv877306	chr3:105372196-105495841	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv877307	chr3:105373836-105465189	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv591242	chr3:105373836-105470134	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877308	chr3:105373836-105495841	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv877309	chr3:105373836-105542435	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105373000-105419600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:105373400-105401600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:105373600-105419600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:105373800-105406200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:105375000-105395600	Weak transcription	Brain Anterior Caudate	brain
6	chr3:105375200-105395400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:105375200-105395600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr3:105375800-105399000	Weak transcription	Dnd41	blood
9	chr3:105375800-105405000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:105375800-105419600	Weak transcription	Colonic Mucosa	Colon
11	chr3:105375800-105464600	Weak transcription	Small Intestine	intestine
12	chr3:105376000-105395600	Weak transcription	Esophagus	oesophagus
13	chr3:105376000-105438200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:105376200-105397200	Weak transcription	NHLF	lung
15	chr3:105376400-105395600	Weak transcription	Fetal Brain Male	brain
16	chr3:105376800-105395400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:105376800-105440000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr3:105377200-105399200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr3:105378000-105395600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:105378000-105420800	Weak transcription	HUVEC	blood vessel
21	chr3:105378000-105455400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:105378600-105438600	Weak transcription	Spleen	Spleen
23	chr3:105379000-105437400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:105379200-105440400	Weak transcription	Thymus	Thymus
25	chr3:105380600-105411800	Weak transcription	Brain Substantia Nigra	brain
26	chr3:105382200-105404800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:105382400-105395600	Weak transcription	Pancreas	Pancrea
28	chr3:105382400-105397200	Weak transcription	Lung	lung
29	chr3:105382400-105405000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:105382800-105404000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr3:105383800-105398600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:105384200-105400000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:105384600-105404600	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr3:105385000-105404600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:105385200-105398000	Strong transcription	HSMM	muscle
36	chr3:105385200-105404400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:105385400-105405200	Strong transcription	Osteobl	bone
38	chr3:105385400-105411000	Weak transcription	HMEC	breast
39	chr3:105385600-105400200	Weak transcription	Fetal Stomach	stomach
40	chr3:105385600-105404400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:105385600-105404400	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr3:105385800-105404400	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr3:105387000-105395400	Weak transcription	Brain Angular Gyrus	brain
44	chr3:105387200-105420800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr3:105388400-105395400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr3:105388400-105421000	Weak transcription	Gastric	stomach
47	chr3:105388600-105395200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr3:105388600-105395600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr3:105388600-105419800	Weak transcription	Brain Germinal Matrix	brain
50	chr3:105388800-105395200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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