Variant report

Variant	rs2472803
Chromosome Location	chr6:14767750-14767751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14765789..14768188-chr6:14772033..14773790,2	MCF-7	breast:
2	chr6:14758724..14760545-chr6:14765666..14768549,2	K562	blood:
3	chr6:14766777..14769004-chr6:15247348..15250309,2	MCF-7	breast:
4	chr6:14766318..14768956-chr6:14771278..14773593,2	K562	blood:
5	chr6:14762306..14764528-chr6:14766807..14769231,2	K562	blood:
6	chr6:14710281..14712949-chr6:14766725..14768663,2	K562	blood:

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000235488	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2472802	0.87[CEU][hapmap];0.82[AMR][1000 genomes]
rs731187	0.83[CEU][hapmap]
rs742038	0.83[CEU][hapmap]
rs747487	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14759200-14767800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:14760400-14772400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:14763000-14770400	Weak transcription	Adipose Nuclei	Adipose
4	chr6:14763600-14770600	Weak transcription	Left Ventricle	heart
5	chr6:14763800-14777000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:14764200-14770800	Weak transcription	Stomach Mucosa	stomach
7	chr6:14764200-14771000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:14764800-14768200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:14765200-14769000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:14765400-14769000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:14765400-14770200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:14765600-14770400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:14766000-14768200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:14766000-14770000	Weak transcription	NHLF	lung
15	chr6:14766000-14771200	Weak transcription	Placenta	Placenta
16	chr6:14766600-14768400	Enhancers	Fetal Brain Male	brain
17	chr6:14766600-14770400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:14766600-14771000	Weak transcription	A549	lung
19	chr6:14766800-14768200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:14766800-14768400	Enhancers	Fetal Lung	lung
21	chr6:14767000-14768200	Enhancers	Fetal Kidney	kidney
22	chr6:14767000-14768400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:14767000-14769800	Weak transcription	Fetal Thymus	thymus
24	chr6:14767200-14768000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:14767200-14768400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:14767200-14768400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:14767200-14768400	Enhancers	K562	blood
28	chr6:14767400-14767800	Enhancers	Fetal Brain Female	brain
29	chr6:14767400-14768000	Enhancers	Brain Anterior Caudate	brain
30	chr6:14767400-14768000	Flanking Active TSS	NHDF-Ad	bronchial
31	chr6:14767400-14768200	Enhancers	Fetal Stomach	stomach
32	chr6:14767400-14768200	Enhancers	Ovary	ovary
33	chr6:14767600-14768000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:14767600-14768000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:14767600-14768000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:14767600-14768000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:14767600-14768000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:14767600-14768000	Enhancers	Rectal Smooth Muscle	rectum
39	chr6:14767600-14768000	Weak transcription	Right Atrium	heart

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