Variant report

Variant	rs742038
Chromosome Location	chr6:14764877-14764878
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14764140..14766858-chr6:15246194..15249662,3	MCF-7	breast:
2	chr6:14762315..14764883-chr6:15247297..15249027,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235488	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2103529	0.92[ASN][1000 genomes]
rs2256990	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2472799	0.82[CHB][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2472801	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2472802	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2472803	0.83[CEU][hapmap]
rs731187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742039	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs747487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462641	chr6:14203872-14764983	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv600997	chr6:14203872-14764983	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14743600-14767400	Weak transcription	Right Atrium	heart
2	chr6:14758800-14766800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:14759200-14767800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:14760400-14772400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:14760800-14765400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:14761000-14765200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:14761000-14766000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:14762600-14766000	Enhancers	Placenta	Placenta
9	chr6:14762800-14765400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:14762800-14765600	Enhancers	HMEC	breast
11	chr6:14763000-14770400	Weak transcription	Adipose Nuclei	Adipose
12	chr6:14763200-14766000	Enhancers	Hela-S3	cervix
13	chr6:14763600-14770600	Weak transcription	Left Ventricle	heart
14	chr6:14763800-14767000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:14763800-14777000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:14764000-14765000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:14764000-14765200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:14764000-14765200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:14764000-14765400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:14764000-14765400	Weak transcription	NHLF	lung
21	chr6:14764200-14765200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:14764200-14765200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:14764200-14765200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:14764200-14765400	Weak transcription	NHDF-Ad	bronchial
25	chr6:14764200-14765800	Weak transcription	K562	blood
26	chr6:14764200-14770800	Weak transcription	Stomach Mucosa	stomach
27	chr6:14764200-14771000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:14764400-14765400	Weak transcription	A549	lung
29	chr6:14764400-14766200	Weak transcription	Fetal Thymus	thymus
30	chr6:14764800-14768200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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