Variant report

Variant	rs2474607
Chromosome Location	chr10:38455837-38455838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1010729	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11011426	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs11598044	1.00[CHB][hapmap]
rs1985260	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2018739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474555	0.89[EUR][1000 genomes]
rs2474589	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2474592	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474600	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2474603	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2474606	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2738186	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2738187	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2738190	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2738191	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2738193	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2738207	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2738209	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2749575	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2749577	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2749587	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2749588	0.81[CHB][hapmap]
rs594594	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs633400	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs662928	0.81[CHB][hapmap]
rs688608	1.00[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv895031	chr10:38402789-38464886	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv895032	chr10:38427708-38498909	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv895033	chr10:38432348-38537070	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv947857	chr10:38453951-38497640	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38449400-38456800	Weak transcription	Brain Substantia Nigra	brain

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