Variant report

Variant	rs2474642
Chromosome Location	chr14:33181099-33181100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10131793	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1013682	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10149509	0.83[CEU][hapmap]
rs1040601	0.83[CEU][hapmap]
rs1295912	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1296837	0.88[CEU][hapmap]
rs17440692	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17440720	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17519834	0.88[CHB][hapmap]
rs2300831	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2300832	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2300834	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2300837	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41285498	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4981999	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4982001	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4982002	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73266957	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73266980	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs981524	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33172600-33191600	Weak transcription	Psoas Muscle	Psoas
2	chr14:33173200-33194800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:33177000-33181200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:33177000-33181400	Enhancers	Fetal Heart	heart
5	chr14:33177600-33181200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:33177800-33181800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:33178800-33183200	Weak transcription	Aorta	Aorta
8	chr14:33178800-33191600	Weak transcription	Right Ventricle	heart
9	chr14:33179000-33193400	Weak transcription	HSMMtube	muscle
10	chr14:33180200-33181200	Enhancers	Brain Cingulate Gyrus	brain
11	chr14:33180200-33181200	Enhancers	Brain Hippocampus Middle	brain
12	chr14:33180200-33181200	Enhancers	Placenta	Placenta
13	chr14:33180400-33193400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:33180600-33186200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:33180600-33191800	Weak transcription	Left Ventricle	heart
16	chr14:33180600-33193800	Weak transcription	Fetal Stomach	stomach
17	chr14:33180800-33194600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr14:33181000-33182800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:33181000-33183000	Weak transcription	Brain Anterior Caudate	brain
20	chr14:33181000-33183000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr14:33181000-33188200	Weak transcription	Brain Angular Gyrus	brain
22	chr14:33181000-33193000	Weak transcription	Brain Substantia Nigra	brain

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