Variant report

Variant	rs2476019
Chromosome Location	chr1:197366143-197366144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10801603	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs10922234	0.90[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10922251	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10922253	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs10922261	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12131160	1.00[JPT][hapmap]
rs12134409	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12563307	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1337167	0.95[CEU][hapmap]
rs1337168	0.95[CEU][hapmap]
rs17554990	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17555558	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2193733	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs2476021	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2476023	1.00[CEU][hapmap]
rs2494269	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759656	1.00[CEU][hapmap]
rs2759659	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2759661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2786098	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs2786101	0.95[CEU][hapmap]
rs2786116	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2786117	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2786119	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2821101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2821107	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2821115	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs2821116	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs2821117	0.95[CEU][hapmap]
rs2821125	0.95[CEU][hapmap]
rs2821132	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6677361	0.82[JPT][hapmap]
rs6685222	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197361400-197368800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:197362400-197368800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:197364800-197370800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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