Variant report

Variant	rs2477932
Chromosome Location	chr10:27220764-27220765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1776747	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1776748	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1776750	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1815321	0.89[ASN][1000 genomes]
rs2477933	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2477935	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2765423	0.84[ASN][1000 genomes]
rs2797933	0.91[ASN][1000 genomes]
rs2995666	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41279926	0.84[ASN][1000 genomes]
rs7100739	0.87[ASN][1000 genomes]
rs74126891	0.87[ASN][1000 genomes]
rs74126899	0.84[ASN][1000 genomes]
rs9299836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757376	chr10:27160932-27229993	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759740	chr10:27160932-27229993	Strong transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv430140	chr10:27165095-27227681	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2752390	chr10:27165095-27241780	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv894978	chr10:27185286-27239820	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1036080	chr10:27215829-27229993	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27220000-27220800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr10:27220000-27220800	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr10:27220000-27220800	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr10:27220000-27220800	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr10:27220000-27220800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:27220200-27220800	Active TSS	H9 Cell Line	embryonic stem cell
7	chr10:27220200-27220800	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr10:27220200-27220800	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr10:27220200-27220800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:27220200-27220800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:27220200-27220800	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:27220200-27220800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr10:27220200-27220800	Enhancers	Primary hematopoietic stem cells	blood
14	chr10:27220200-27220800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr10:27220200-27220800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr10:27220200-27220800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:27220200-27220800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:27220200-27220800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:27220200-27220800	Enhancers	Gastric	stomach
20	chr10:27220200-27220800	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr10:27220200-27220800	Enhancers	Spleen	Spleen
22	chr10:27220200-27221400	Enhancers	Lung	lung
23	chr10:27220200-27223200	Enhancers	Brain Germinal Matrix	brain
24	chr10:27220400-27220800	Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr10:27220400-27220800	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr10:27220400-27220800	Flanking Active TSS	Duodenum Mucosa	Duodenum
27	chr10:27220400-27220800	Flanking Active TSS	Fetal Intestine Large	intestine
28	chr10:27220400-27220800	Enhancers	Fetal Muscle Leg	muscle
29	chr10:27220400-27220800	Enhancers	Left Ventricle	heart
30	chr10:27220400-27220800	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr10:27220400-27220800	Active TSS	GM12878-XiMat	blood
32	chr10:27220600-27220800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
33	chr10:27220600-27220800	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:27220600-27220800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:27220600-27220800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:27220600-27220800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr10:27220600-27220800	Flanking Active TSS	Fetal Intestine Small	intestine
38	chr10:27220600-27220800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
39	chr10:27220600-27220800	Enhancers	Placenta	Placenta
40	chr10:27220600-27220800	Enhancers	Fetal Stomach	stomach
41	chr10:27220600-27220800	Enhancers	Ovary	ovary
42	chr10:27220600-27220800	Flanking Active TSS	HepG2	liver
43	chr10:27220600-27221600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:27220600-27228000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:27220600-27234200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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