Variant report

Variant	rs74126899
Chromosome Location	chr10:27235565-27235566
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:27235551-27235811	K562	blood:	n/a	n/a
2	MAX	chr10:27235246-27235700	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27228167..27230462-chr10:27233630..27235621,2	MCF-7	breast:

Variant related genes	Relation type
LINC00614	TF binding region
LINC00202-1	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11015437	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1776747	0.90[ASN][1000 genomes]
rs1776748	0.90[ASN][1000 genomes]
rs1776750	0.90[ASN][1000 genomes]
rs1815321	0.86[ASN][1000 genomes]
rs2477932	0.84[ASN][1000 genomes]
rs2477933	0.90[ASN][1000 genomes]
rs2477935	0.86[ASN][1000 genomes]
rs2765423	0.90[ASN][1000 genomes]
rs2797933	0.88[ASN][1000 genomes]
rs2995666	0.90[ASN][1000 genomes]
rs41279926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57605156	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7100739	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74126891	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74128506	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7894087	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs796833	0.93[ASN][1000 genomes]
rs9299836	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752390	chr10:27165095-27241780	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv894978	chr10:27185286-27239820	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2753825	chr10:27223642-27241780	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2754238	chr10:27223642-27241780	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv947784	chr10:27224620-27235850	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2750888	chr10:27225647-27241780	ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2760211	chr10:27225904-27235834	Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1047111	chr10:27225904-27242991	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1036722	chr10:27225904-27243972	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1043456	chr10:27225904-27246821	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27229200-27239000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:27234200-27235600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:27234400-27235600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr10:27234400-27235800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:27234400-27236000	Flanking Active TSS	NHEK	skin
6	chr10:27234800-27235800	Enhancers	HMEC	breast
7	chr10:27235000-27235600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:27235000-27235600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:27235000-27235600	Active TSS	Brain Anterior Caudate	brain
10	chr10:27235000-27235600	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr10:27235000-27235600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:27235000-27235600	Active TSS	Duodenum Mucosa	Duodenum
13	chr10:27235000-27235600	Enhancers	Pancreas	Pancrea
14	chr10:27235000-27235800	Enhancers	Placenta	Placenta
15	chr10:27235200-27235600	Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr10:27235200-27235600	Flanking Active TSS	Esophagus	oesophagus
17	chr10:27235200-27235600	Bivalent/Poised TSS	Fetal Brain Female	brain
18	chr10:27235200-27235600	Enhancers	Gastric	stomach
19	chr10:27235200-27235600	Active TSS	Psoas Muscle	Psoas
20	chr10:27235200-27235800	Active TSS	Brain Germinal Matrix	brain
21	chr10:27235400-27235600	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:27235400-27235600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:27235400-27235600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:27235400-27235600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
25	chr10:27235400-27235600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
26	chr10:27235400-27235600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr10:27235400-27235600	Bivalent Enhancer	Left Ventricle	heart
28	chr10:27235400-27235800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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