Variant report

Variant	rs57605156
Chromosome Location	chr10:27251920-27251921
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD26-5	chr10:27251486-27251978	NONHSAT011873

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11015437	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1776747	0.85[ASN][1000 genomes]
rs1776748	0.86[ASN][1000 genomes]
rs1776750	0.86[ASN][1000 genomes]
rs1815321	0.82[ASN][1000 genomes]
rs2477933	0.86[ASN][1000 genomes]
rs2477935	0.82[ASN][1000 genomes]
rs2765423	0.85[ASN][1000 genomes]
rs2797933	0.84[ASN][1000 genomes]
rs2995666	0.86[ASN][1000 genomes]
rs41279926	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56279528	0.86[EUR][1000 genomes]
rs7100739	0.88[ASN][1000 genomes]
rs74126891	0.88[ASN][1000 genomes]
rs74126899	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74128506	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7894087	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs796833	0.88[ASN][1000 genomes]
rs9299836	0.86[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27241200-27257400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:27243000-27294800	Weak transcription	Liver	Liver
3	chr10:27244400-27257200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:27244800-27271800	Weak transcription	Pancreas	Pancrea
5	chr10:27245600-27255000	Weak transcription	Left Ventricle	heart
6	chr10:27245600-27267800	Weak transcription	Fetal Intestine Small	intestine
7	chr10:27245600-27270200	Weak transcription	Ovary	ovary
8	chr10:27246000-27269200	Weak transcription	Adipose Nuclei	Adipose
9	chr10:27246600-27273000	Weak transcription	Fetal Stomach	stomach
10	chr10:27247600-27258000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:27247600-27269200	Weak transcription	Spleen	Spleen
12	chr10:27247800-27269200	Weak transcription	Lung	lung
13	chr10:27249600-27268600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr10:27249800-27258000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:27249800-27258000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:27249800-27271400	Weak transcription	Right Ventricle	heart
17	chr10:27251000-27254800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:27251000-27255400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:27251600-27253600	Strong transcription	Primary T cells from cord blood	blood
20	chr10:27251600-27257200	Weak transcription	Brain Angular Gyrus	brain
21	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
22	chr10:27251800-27265600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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