Variant report

Variant	rs2483573
Chromosome Location	chr10:116338212-116338213
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1333688	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483534	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2483535	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483536	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483537	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483539	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2483540	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483541	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483542	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483543	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2483544	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483545	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483546	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483548	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483550	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483552	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483553	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483554	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483555	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483556	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483557	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2483558	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2483559	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2483568	0.84[AMR][1000 genomes]
rs2483578	0.81[AMR][1000 genomes]
rs2483581	0.81[AMR][1000 genomes]
rs2483583	0.80[AMR][1000 genomes]
rs2497663	0.82[AMR][1000 genomes]
rs2497725	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2497726	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2497727	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2497728	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2497729	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2497730	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2497731	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2497732	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2497735	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2497736	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2497737	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2497738	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2497739	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2497740	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2497741	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2497742	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2497744	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7085345	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7091986	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7915116	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7915301	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7915452	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9325544	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116323400-116352000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:116323800-116352000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:116331000-116339000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:116333600-116345000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:116335400-116351600	Weak transcription	Fetal Intestine Small	intestine
6	chr10:116335600-116343400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:116335600-116344200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:116336400-116339600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:116336600-116341200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:116336800-116345400	Weak transcription	Psoas Muscle	Psoas
11	chr10:116336800-116359800	Weak transcription	Lung	lung
12	chr10:116336800-116360000	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:116337000-116340800	Weak transcription	Fetal Heart	heart
14	chr10:116337000-116360200	Weak transcription	Esophagus	oesophagus
15	chr10:116337400-116352800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:116337600-116353000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:116337800-116341400	Weak transcription	Adipose Nuclei	Adipose
18	chr10:116337800-116350000	Weak transcription	Liver	Liver
19	chr10:116337800-116362600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:116338000-116341000	Weak transcription	Right Ventricle	heart
21	chr10:116338000-116343400	Weak transcription	HSMMtube	muscle
22	chr10:116338000-116343600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr10:116338000-116343600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:116338000-116345600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:116338200-116340000	Weak transcription	Left Ventricle	heart
26	chr10:116338200-116340800	Weak transcription	Brain Anterior Caudate	brain
27	chr10:116338200-116345200	Weak transcription	Right Atrium	heart

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