Variant report

Variant	rs2483802
Chromosome Location	chr15:97417568-97417569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs11154638	0.86[ASN][1000 genomes]
rs12190468	0.88[ASN][1000 genomes]
rs12196690	0.88[ASN][1000 genomes]
rs12198874	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12201347	0.87[ASN][1000 genomes]
rs1334353	0.87[ASN][1000 genomes]
rs1572211	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2246167	0.87[ASN][1000 genomes]
rs2246168	0.87[ASN][1000 genomes]
rs2246281	0.87[ASN][1000 genomes]
rs2246372	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2249537	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2249691	0.88[ASN][1000 genomes]
rs2249821	0.88[ASN][1000 genomes]
rs2250409	0.83[ASN][1000 genomes]
rs2327152	0.83[ASN][1000 genomes]
rs2446214	0.88[ASN][1000 genomes]
rs2446216	0.88[ASN][1000 genomes]
rs2446217	0.88[ASN][1000 genomes]
rs2446218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2446221	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2446223	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2491205	0.88[ASN][1000 genomes]
rs2491207	0.88[ASN][1000 genomes]
rs2491208	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2608900	0.85[ASN][1000 genomes]
rs2608901	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2608907	0.81[ASN][1000 genomes]
rs2608923	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2608924	0.88[ASN][1000 genomes]
rs2608925	0.88[ASN][1000 genomes]
rs2608929	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2608931	0.88[ASN][1000 genomes]
rs2608932	0.88[ASN][1000 genomes]
rs2608933	0.88[ASN][1000 genomes]
rs2608936	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2608944	0.82[ASN][1000 genomes]
rs2608945	0.83[ASN][1000 genomes]
rs2608947	0.87[ASN][1000 genomes]
rs2608948	0.87[ASN][1000 genomes]
rs2608949	0.86[ASN][1000 genomes]
rs2608950	0.86[ASN][1000 genomes]
rs2608956	0.88[ASN][1000 genomes]
rs2608957	0.88[ASN][1000 genomes]
rs2608958	0.88[ASN][1000 genomes]
rs2608959	0.88[ASN][1000 genomes]
rs2608960	0.88[ASN][1000 genomes]
rs2608961	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2608962	0.88[ASN][1000 genomes]
rs2608963	0.88[ASN][1000 genomes]
rs2608964	0.88[ASN][1000 genomes]
rs2608965	0.88[ASN][1000 genomes]
rs2608966	0.88[ASN][1000 genomes]
rs2608967	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2608968	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2608969	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2608970	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2608971	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2608972	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2608973	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2608974	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2749927	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2749928	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2749936	0.90[ASN][1000 genomes]
rs2749937	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2781622	0.87[ASN][1000 genomes]
rs2781623	0.87[ASN][1000 genomes]
rs2781624	0.87[ASN][1000 genomes]
rs2781625	0.87[ASN][1000 genomes]
rs2781626	0.87[ASN][1000 genomes]
rs2781627	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2781628	0.86[ASN][1000 genomes]
rs2781629	0.91[ASN][1000 genomes]
rs2781630	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2781631	0.88[ASN][1000 genomes]
rs2781632	0.88[ASN][1000 genomes]
rs2781633	0.88[ASN][1000 genomes]
rs2781634	0.88[ASN][1000 genomes]
rs2781636	0.88[ASN][1000 genomes]
rs2781637	0.85[ASN][1000 genomes]
rs2781638	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2781639	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2781640	0.85[ASN][1000 genomes]
rs2781643	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2781644	0.87[ASN][1000 genomes]
rs2781648	0.87[ASN][1000 genomes]
rs2781653	0.87[ASN][1000 genomes]
rs2807275	0.83[ASN][1000 genomes]
rs2807276	0.83[ASN][1000 genomes]
rs2807277	0.88[ASN][1000 genomes]
rs2807279	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2807280	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2807281	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2807282	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2807283	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2807284	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2807286	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2807287	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2807288	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2807289	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2807290	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2807291	0.87[ASN][1000 genomes]
rs2807292	0.87[ASN][1000 genomes]
rs2807293	0.87[ASN][1000 genomes]
rs2807294	0.87[ASN][1000 genomes]
rs2807295	0.87[ASN][1000 genomes]
rs2807296	0.87[ASN][1000 genomes]
rs2807298	0.83[ASN][1000 genomes]
rs36158725	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3850240	0.88[ASN][1000 genomes]
rs3904568	0.87[ASN][1000 genomes]
rs4053133	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4053139	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4243503	0.87[ASN][1000 genomes]
rs4285347	0.86[ASN][1000 genomes]
rs4294029	0.88[ASN][1000 genomes]
rs4492213	0.81[ASN][1000 genomes]
rs4565332	0.88[ASN][1000 genomes]
rs4566904	0.88[ASN][1000 genomes]
rs4897522	0.87[ASN][1000 genomes]
rs4897526	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897528	0.85[ASN][1000 genomes]
rs6569744	0.88[ASN][1000 genomes]
rs6569745	0.88[ASN][1000 genomes]
rs6569746	0.88[ASN][1000 genomes]
rs6912764	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6918117	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6927780	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6927940	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7743698	0.86[ASN][1000 genomes]
rs7743727	0.88[ASN][1000 genomes]
rs7744007	0.88[ASN][1000 genomes]
rs7744116	0.88[ASN][1000 genomes]
rs9321298	0.88[ASN][1000 genomes]
rs9321301	0.88[ASN][1000 genomes]
rs9375816	0.88[ASN][1000 genomes]
rs9398987	0.87[ASN][1000 genomes]
rs9402335	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9402336	0.85[ASN][1000 genomes]
rs9483293	0.87[ASN][1000 genomes]
rs9483294	0.85[ASN][1000 genomes]
rs9493003	0.84[ASN][1000 genomes]
rs9493004	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9784795	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:97415000-97419400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr15:97415000-97420000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr15:97415200-97421200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:97417000-97417600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
5	chr15:97417000-97420000	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr15:97417200-97417600	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr15:97417200-97417600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:97417200-97418000	Active TSS	H9 Cell Line	embryonic stem cell
9	chr15:97417400-97418000	Active TSS	H1 Cell Line	embryonic stem cell

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