Variant report

Variant	rs9402336
Chromosome Location	chr6:131829604-131829605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs11154638	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12201347	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1334353	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1572211	0.83[ASN][1000 genomes]
rs2246167	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2246168	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2246281	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2246372	0.83[ASN][1000 genomes]
rs2249537	0.82[ASN][1000 genomes]
rs2446218	0.85[ASN][1000 genomes]
rs2446223	0.84[ASN][1000 genomes]
rs2483802	0.85[ASN][1000 genomes]
rs2491208	0.82[ASN][1000 genomes]
rs2608900	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2608901	0.83[ASN][1000 genomes]
rs2608915	0.81[EUR][1000 genomes]
rs2608923	0.86[ASN][1000 genomes]
rs2608924	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2608925	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2608929	0.85[ASN][1000 genomes]
rs2608931	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2608932	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2608933	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2608936	0.83[ASN][1000 genomes]
rs2608947	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2608948	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2608949	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2608950	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2608967	0.81[ASN][1000 genomes]
rs2608968	0.81[ASN][1000 genomes]
rs2608969	0.83[ASN][1000 genomes]
rs2608970	0.83[ASN][1000 genomes]
rs2608971	0.83[ASN][1000 genomes]
rs2608972	0.83[ASN][1000 genomes]
rs2608973	0.83[ASN][1000 genomes]
rs2608974	0.83[ASN][1000 genomes]
rs2749927	0.85[ASN][1000 genomes]
rs2749929	0.81[ASN][1000 genomes]
rs2749936	0.83[ASN][1000 genomes]
rs2749937	0.85[ASN][1000 genomes]
rs2781622	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2781623	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2781624	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2781625	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2781626	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2781627	0.83[ASN][1000 genomes]
rs2781628	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2781629	0.83[ASN][1000 genomes]
rs2781630	0.83[ASN][1000 genomes]
rs2781631	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2781632	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2781633	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2781634	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2781636	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2781637	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2781638	0.83[ASN][1000 genomes]
rs2781639	0.83[ASN][1000 genomes]
rs2781640	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2781644	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2781648	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2781653	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2807280	0.83[ASN][1000 genomes]
rs2807281	0.83[ASN][1000 genomes]
rs2807282	0.83[ASN][1000 genomes]
rs2807283	0.83[ASN][1000 genomes]
rs2807284	0.83[ASN][1000 genomes]
rs2807286	0.83[ASN][1000 genomes]
rs2807287	0.83[ASN][1000 genomes]
rs2807288	0.83[ASN][1000 genomes]
rs2807289	0.83[ASN][1000 genomes]
rs2807290	0.83[ASN][1000 genomes]
rs2807291	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2807292	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2807293	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2807294	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2807295	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2807296	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2807298	0.82[EUR][1000 genomes]
rs36158725	0.83[ASN][1000 genomes]
rs3850240	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3904568	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4053133	0.82[ASN][1000 genomes]
rs4053139	0.83[ASN][1000 genomes]
rs4243503	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4897522	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4897526	0.83[ASN][1000 genomes]
rs4897528	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912764	0.83[ASN][1000 genomes]
rs6918117	0.82[ASN][1000 genomes]
rs6927780	0.82[ASN][1000 genomes]
rs6927940	0.83[ASN][1000 genomes]
rs7450186	0.84[EUR][1000 genomes]
rs9321298	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9321301	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9375816	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9398987	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9483293	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9483294	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9493003	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9493004	0.88[ASN][1000 genomes]
rs9784795	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv1839224	chr6:131703293-131834119	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv886667	chr6:131807510-131876943	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131819800-131830800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:131824800-131830000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:131825400-131830600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:131825400-131830800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:131826600-131830600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:131826800-131830800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:131828000-131831800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:131829200-131830000	Active TSS	H9 Cell Line	embryonic stem cell
9	chr6:131829600-131830400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:131829600-131831400	Weak transcription	H1 Cell Line	embryonic stem cell

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