Variant report

Variant	rs2749929
Chromosome Location	chr6:131859814-131859815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs2246281	0.80[EUR][1000 genomes]
rs2446213	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2608900	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2608901	0.85[ASN][1000 genomes]
rs2608907	0.94[ASN][1000 genomes]
rs2608909	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2608910	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2608912	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2608913	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2608914	0.89[EUR][1000 genomes]
rs2608915	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2608916	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2608917	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2608918	0.89[EUR][1000 genomes]
rs2608919	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2608920	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2608921	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2608923	0.82[ASN][1000 genomes]
rs2608924	0.87[ASN][1000 genomes]
rs2608925	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2608929	0.83[ASN][1000 genomes]
rs2608931	0.87[ASN][1000 genomes]
rs2608932	0.87[ASN][1000 genomes]
rs2608933	0.87[ASN][1000 genomes]
rs2608975	0.85[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2608976	0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2608977	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2608981	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2608982	0.86[EUR][1000 genomes]
rs2608983	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2749928	0.95[ASN][1000 genomes]
rs2749930	0.91[ASN][1000 genomes]
rs2749932	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2749933	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2781622	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2781623	0.80[EUR][1000 genomes]
rs2781625	0.80[EUR][1000 genomes]
rs2781628	0.80[EUR][1000 genomes]
rs2781631	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2781632	0.87[ASN][1000 genomes]
rs2781633	0.87[ASN][1000 genomes]
rs2781634	0.87[ASN][1000 genomes]
rs2781636	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2781637	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2781639	0.85[ASN][1000 genomes]
rs2781640	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2781643	0.88[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2781646	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2781647	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2781649	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2781650	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2781651	0.86[EUR][1000 genomes]
rs2781652	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2781653	0.94[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap]
rs28612296	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3850240	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897522	0.80[EUR][1000 genomes]
rs4897528	0.81[ASN][1000 genomes]
rs6918117	0.87[ASN][1000 genomes]
rs6929820	0.81[EUR][1000 genomes]
rs7743698	0.85[ASN][1000 genomes]
rs9321298	0.87[ASN][1000 genomes]
rs9321301	0.87[ASN][1000 genomes]
rs9375816	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9402336	0.81[ASN][1000 genomes]
rs9483293	0.83[EUR][1000 genomes]
rs9493003	0.81[EUR][1000 genomes]
rs9493004	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886667	chr6:131807510-131876943	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2749929	ARG1	cis	Whole Blood	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131859800-131860400	Flanking Active TSS	HepG2	liver

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