Variant report

Variant	rs2484033
Chromosome Location	chr1:210287837-210287838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11590161	0.82[EUR][1000 genomes]
rs12401646	0.86[EUR][1000 genomes]
rs12750599	0.83[EUR][1000 genomes]
rs17318612	0.85[EUR][1000 genomes]
rs17318744	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2451696	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2451697	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2484030	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2484031	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2484034	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34931444	0.82[EUR][1000 genomes]
rs35256257	0.85[EUR][1000 genomes]
rs56131913	0.83[EUR][1000 genomes]
rs61820396	0.81[EUR][1000 genomes]
rs61820397	0.85[EUR][1000 genomes]
rs61826848	0.84[EUR][1000 genomes]
rs6540578	0.83[EUR][1000 genomes]
rs7543650	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv873140	chr1:210068117-210335644	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1821002	chr1:210108473-210291476	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv873141	chr1:210228131-210296910	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv873142	chr1:210233610-210291121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv873143	chr1:210233610-210296910	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv873144	chr1:210252522-210347417	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv818800	chr1:210258653-210304319	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3452678	chr1:210284385-210289804	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	esv3452679	chr1:210284385-210289804	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210274200-210290600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:210280000-210290600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:210283000-210298000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:210285400-210288400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr1:210285600-210288000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:210286400-210289200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:210287800-210289200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links