Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12401646	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12750599	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17318612	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17318744	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2451696	0.92[EUR][1000 genomes]
rs2451697	0.92[EUR][1000 genomes]
rs2484030	0.91[EUR][1000 genomes]
rs2484031	0.91[EUR][1000 genomes]
rs2484032	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2484033	0.82[EUR][1000 genomes]
rs2484034	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2485883	0.84[ASN][1000 genomes]
rs34704551	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34931444	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35256257	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4844954	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.84[MEX][hapmap]
rs56131913	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61820396	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61820397	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61826848	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6540578	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6657016	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7543650	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873140	chr1:210068117-210335644	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1821002	chr1:210108473-210291476	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210159400-210166600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:210159600-210166200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:210159600-210168200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:210162800-210189200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:210163600-210166200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: