Variant report
Variant | rs2484032 |
---|---|
Chromosome Location | chr1:210317225-210317226 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:11)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:11 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:210314232..210320481-chr1:210542652..210547614,9 | MCF-7 | breast: | |
2 | chr1:210316361..210320109-chr1:210546317..210548810,5 | MCF-7 | breast: | |
3 | chr1:210314956..210318963-chr1:210546030..210548904,4 | K562 | blood: | |
4 | chr1:210316536..210317443-chr1:211686960..211687594,2 | K562 | blood: | |
5 | chr1:210310049..210311976-chr1:210316997..210318625,2 | K562 | blood: | |
6 | chr1:210316840..210317797-chr1:211307565..211308512,2 | K562 | blood: | |
7 | chr1:210317209..210318789-chr1:210487022..210489666,2 | K562 | blood: | |
8 | chr1:210316574..210317598-chr1:210573631..210575041,4 | K562 | blood: | |
9 | chr1:210316285..210317489-chr1:210533856..210534705,3 | MCF-7 | breast: | |
10 | chr1:210316548..210317518-chr1:210484113..210484757,2 | MCF-7 | breast: | |
11 | chr1:210316799..210319752-chr1:210525162..210527241,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000200972 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10779523 | 0.80[AFR][1000 genomes] |
rs11119425 | 0.84[AFR][1000 genomes] |
rs11119427 | 0.81[AFR][1000 genomes] |
rs11119429 | 0.83[AFR][1000 genomes] |
rs12129172 | 0.81[AFR][1000 genomes] |
rs12401646 | 0.85[AMR][1000 genomes] |
rs12750599 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs1338286 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs1413695 | 0.86[AFR][1000 genomes] |
rs1490419 | 0.82[AFR][1000 genomes] |
rs17318612 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes] |
rs17318744 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes] |
rs2451696 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs2451697 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs2484030 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2484031 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2484034 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes] |
rs2485883 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs2485884 | 1.00[ASN][1000 genomes] |
rs2485885 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs2485891 | 0.83[AFR][1000 genomes] |
rs2485892 | 0.83[AFR][1000 genomes] |
rs2485897 | 1.00[ASN][1000 genomes] |
rs2485898 | 1.00[ASN][1000 genomes] |
rs2494169 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
rs2494170 | 1.00[ASN][1000 genomes] |
rs2494191 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs34704551 | 0.84[ASN][1000 genomes] |
rs34931444 | 0.84[ASN][1000 genomes] |
rs35256257 | 0.85[AMR][1000 genomes] |
rs4844947 | 0.80[AFR][1000 genomes] |
rs4844954 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61820397 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs61826848 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes] |
rs6657016 | 0.84[ASN][1000 genomes] |
rs7543650 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1014034 | chr1:209759648-210501731 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
2 | nsv873140 | chr1:210068117-210335644 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv873144 | chr1:210252522-210347417 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
4 | nsv873145 | chr1:210302595-210347417 | Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
5 | nsv468072 | chr1:210304319-210338196 | Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
6 | nsv549104 | chr1:210304319-210338196 | Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
7 | nsv549105 | chr1:210304319-210338397 | Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
8 | nsv873146 | chr1:210312760-210347417 | Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:210298400-210318200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr1:210305400-210318400 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
3 | chr1:210313600-210318200 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |