Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1338286	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1338298	0.89[YRI][hapmap]
rs1806963	0.81[AMR][1000 genomes]
rs2096152	0.81[AMR][1000 genomes]
rs2451696	0.97[ASN][1000 genomes]
rs2451697	0.97[ASN][1000 genomes]
rs2484030	1.00[ASN][1000 genomes]
rs2484031	1.00[ASN][1000 genomes]
rs2484032	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2484034	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2485883	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2485884	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2485885	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2485898	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485902	0.84[AMR][1000 genomes]
rs2487907	0.81[AMR][1000 genomes]
rs2494170	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2494191	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4844954	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs654523	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210339400-210361200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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