Variant report

Variant	rs2484516
Chromosome Location	chr10:112837073-112837074
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs44336	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527400	chr10:112833561-112843085	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv896004	chr10:112834763-112842961	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3321787	chr10:112835962-112840760	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv896005	chr10:112835992-112846298	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112835400-112838000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:112835600-112837200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
3	chr10:112835600-112837400	Bivalent/Poised TSS	A549	lung
4	chr10:112835600-112837800	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr10:112835600-112837800	Active TSS	Brain Angular Gyrus	brain
6	chr10:112835600-112837800	Active TSS	HSMMtube	muscle
7	chr10:112835600-112838400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr10:112835600-112838400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
9	chr10:112835600-112838400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
10	chr10:112835600-112839000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr10:112835600-112839000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr10:112835800-112837200	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr10:112835800-112837400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
14	chr10:112835800-112837800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:112835800-112837800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
16	chr10:112835800-112837800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:112835800-112837800	Active TSS	Fetal Brain Male	brain
18	chr10:112835800-112837800	Active TSS	Ovary	ovary
19	chr10:112835800-112837800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
20	chr10:112835800-112837800	Flanking Bivalent TSS/Enh	Osteobl	bone
21	chr10:112835800-112838000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:112835800-112838000	Active TSS	HSMM	muscle
23	chr10:112835800-112838200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:112835800-112838200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:112835800-112838400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
26	chr10:112835800-112838400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
27	chr10:112835800-112838400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
28	chr10:112835800-112838400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
29	chr10:112835800-112840400	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr10:112836000-112837200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:112836000-112837200	Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr10:112836000-112837200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr10:112836000-112837200	Active TSS	Duodenum Mucosa	Duodenum
34	chr10:112836000-112837200	Bivalent/Poised TSS	HepG2	liver
35	chr10:112836000-112837200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
36	chr10:112836000-112837400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:112836000-112837400	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
38	chr10:112836000-112837400	Active TSS	Small Intestine	intestine
39	chr10:112836000-112837400	Flanking Bivalent TSS/Enh	HMEC	breast
40	chr10:112836000-112837600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:112836000-112837600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:112836000-112837800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:112836000-112837800	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr10:112836000-112837800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:112836000-112837800	Active TSS	Aorta	Aorta
46	chr10:112836000-112837800	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr10:112836000-112837800	Active TSS	Fetal Kidney	kidney
48	chr10:112836000-112837800	Active TSS	Gastric	stomach
49	chr10:112836000-112837800	Active TSS	NHDF-Ad	bronchial
50	chr10:112836000-112838000	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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