Variant report

Variant	rs44336
Chromosome Location	chr10:112842139-112842140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10509932	0.95[EUR][1000 genomes]
rs1052550	0.84[EUR][1000 genomes]
rs10732804	0.95[EUR][1000 genomes]
rs10749055	0.95[EUR][1000 genomes]
rs10749056	0.95[EUR][1000 genomes]
rs10787296	0.95[EUR][1000 genomes]
rs1571240	0.91[EUR][1000 genomes]
rs17128095	0.84[EUR][1000 genomes]
rs17128168	0.95[EUR][1000 genomes]
rs17128194	0.88[EUR][1000 genomes]
rs2273934	0.84[EUR][1000 genomes]
rs2484516	1.00[ASN][1000 genomes]
rs3750620	0.84[EUR][1000 genomes]
rs4545475	0.84[EUR][1000 genomes]
rs4918615	0.95[EUR][1000 genomes]
rs6585028	0.95[EUR][1000 genomes]
rs7913363	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527400	chr10:112833561-112843085	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv896004	chr10:112834763-112842961	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv896005	chr10:112835992-112846298	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112838400-112847200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:112839400-112843400	Weak transcription	Spleen	Spleen
3	chr10:112839400-112848800	Weak transcription	Right Atrium	heart
4	chr10:112839600-112842200	Enhancers	Stomach Mucosa	stomach
5	chr10:112840400-112842600	Weak transcription	Fetal Intestine Small	intestine
6	chr10:112840400-112843000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:112840400-112844000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:112840400-112844400	Enhancers	Fetal Brain Male	brain
9	chr10:112841000-112846200	Enhancers	Adipose Nuclei	Adipose
10	chr10:112841200-112844000	Enhancers	Pancreas	Pancrea
11	chr10:112841600-112842400	Bivalent Enhancer	Placenta	Placenta
12	chr10:112841600-112842800	Enhancers	Ovary	ovary
13	chr10:112841800-112843000	Flanking Active TSS	Fetal Brain Female	brain
14	chr10:112842000-112842400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:112842000-112843200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:112842000-112843400	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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